1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgttctcagttgaaatcattgcagctcgagtacgtcaagttactatttgggaactggtttcgtggacaaagattttgggcaataaccatgtctgttgtggacgcagTGTGATTTGAAGAAAGCTACTACCTAGTGCAATCAGCTACAGAAGATGGACGTAGTTATAAGCGACATAATCGAGCATTCCATACTGGTGTAGCTGCACA
species | Physcomitrella patens |
transcript | PP1S41_160V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAACCAGATCTTTACGTAGTACAGTAGCTCTAAGAATATTCAATGAAACG TGTGATTTGAAGAAAGCTACTACCTAGTGCAATCAGCTACAGAAGATGGACEST: gi|37847078|gb|BJ605086.1|BJ605086
genomic: GAACCAGATCTTTACGTAGTACAGTAGCTCTAAGAATATTCAATGAAACGgtaagtgttc ... gtggacgcagTGTGATTTGAAGAAAGCTACTACCTAGTGCAATCAGCTACAGAAGATGGAC
EST: GAACCAGATCTTTACGTAGTACAGTAGCTCTAAGAATATTCAATGAAACG TGTGATTTGAAGAAAGCTACTACCTAGTGCAATCAGCTACAGAAGATGGACEST: gi|208400805|gb|DC925085.1|DC925085
genomic: GAACCAGATCTTTACGTAGTACAGTAGCTCTAAGAATATTCAATGAAACGgtaagtgttc ... gtggacgcagTGTGATTTGAAGAAAGCTACTACCTAGTGCAATCAGCTACAGAAGATGGAC
EST: GAACCAGATCTTTACGTAGTACAGTAGCTCTAAGAATATTCAATGAAACG TGTGATTTGAAGAAAGCTACTACCTAGTGCAATCAGCTACAGAAGATGGACEST: gi|162273073|gb|FC447767.1|FC447767
genomic: GAACCAGATCTTTACGTAGTACAGTAGCTCTAAGAATATTCAATGAAACGgtaagtgttc ... gtggacgcagTGTGATTTGAAGAAAGCTACTACCTAGTGCAATCAGCTACAGAAGATGGAC
EST: GAACCAGATCTTTACGTAGTACAGTAGCTCTAAGAATATTCAATGAAACG TGTGATTTGAAGAAAGCTACTACCTAGTGCAATCAGCTACAGAAGATGGAC
genomic: GAACCAGATCTTTACGTAGTACAGTAGCTCTAAGAATATTCAATGAAACGgtaagtgttc ... gtggacgcagTGTGATTTGAAGAAAGCTACTACCTAGTGCAATCAGCTACAGAAGATGGAC
aactggtttcgtggacaaagattttgggcaataaccatgtctgttgtggacgcagTGTGATTTGAAGAAAGCTACTACCTAGTGCAATCAGCTACAGAAGATGGACGTAGTTATAAGCGACATAATCGAGCATTCCATACTGGTGTAGCTGCACA
caataac putative branch site (score: 2)
aaagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgttctcagttgaaatcattgcagctcgagtacgtcaagttactatttgggaactggtttcgtggacaaagattttgggcaataaccatgtctgttgtggacgcagTGTGATTTGAAGAAAGCTACTACCTAGTGCAATCAGCTACAGAAGATGGACGTAGTTATAAGCGACATAATCGAGCATTCCATACTGGTGTAGCTGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC