Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC

Basic information

species Physcomitrella patens
transcript PP1S41_146V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os03g38000.2 (Oryza sativa), 3'ss of exon 3
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
                                     || |  ||| |  |     | |   || | || || ||    ||| ||| |   |   ||| ||  || | |  |         ||| |||| |||| ||||||||  | || ||||| || ||||||||||||||||||||||| |||||||||   || || |  |||||||| || ||| | || |||||||||   |
-------------------------------------gtttgtttggt--tcaactcaagcatcgtagtatttaa----aaacctcatgatctttttggct-caacgcacttg--------ttcattatcttttgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTCGACTGGGACCCCAAGGGCAAGGTTGGCCCGACCACCCCTCTGCCGGATCTTGTAACCATCCATGCTC

upper sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtc--tttgttttcaagaaaaaatctcgtttgcaagt--tgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
                                                | ||   | ||   ||  |  ||||  |  |||   |   || | |  ||  |  ||  ||| | | |   | | | | | || || ||||||||||||  ||||||| || || ||||| ||||| || ||||| || ||||||||||||||||| ||||| ||| | || ||| | || |||||||||   |
------------------------------------------------gtttgtacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgc-ttcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC

upper sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaa-gttgtctgtaatgtatcttag-aaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
                             |   | || |    ||||   ||       | ||  |||| |    | ||  |  || ||| | | |||     |    | ||| |  |||  | |  || | |  | ||||||||  |||||||||| || ||||||||||| ||||||||||| |||||||||   || || || ||||||||||| ||  |||| ||||||||||  |
---------------------------gtttgttttgctacaattgcccgttgtaatgtctgt--ttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC

upper sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtt-tgcaagttgtctgtaatgtatc--ttagaaatg-tttcgttatttt--tttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
                                                         |  |||  ||| | ||| ||    ||||  || |||||         ||  || |  |||| |||  | | |||   ||   ||||||||||  | |||||||| |||||||| ||||| |||||||| ||||||||||||||||| || |  |  ||| | || ||| |||| || || ||  |||
--------------------------------------------------------gtttggtgcttggtatca-gatgttatcttattatgcaaacatataacaaaatagctgttagtaatactctagttgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC

upper sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatg-tttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
                       || |  |  ||||  ||||||   || ||        |||| |   |    || |   |   ||||| | |  ||  |  | |  ||     || |   |||  | | |    ||||||||  | || ||||| || ||||||||||| ||||||||||| |||||||||   || || || || |||||||| ||  |||| |||||||| |  |
-----------------------gtttgtttgctgtaatctcctcaatgttt--------ggtcgtctctcaagagcagggactacgttttccacgtgcttcaatttaattacccaactaacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC

upper sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctac--ggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
                                             |    ||  ||  |   |     |||||     |  | ||      |   |||    | |  |||| | |  |  || ||  | |  | |  ||||||||  | ||| |||| || ||||||||||| ||||||||||| |||||||| |||||||| ||||| ||  | || ||||| || | ||||||||  |
---------------------------------------------gtcagttcttcacagtggaaacctgtttcttgaatcacattctacct---agtgagatcttgtgtaacctgaatctggttaatcacatgtg-cagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACAC

upper sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatt-tctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcg--ttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
                                      ||||||     ||  |  | |||   ||||| ||||||       | |   |||    ||   |   |  | | |||    | | |    ||| ||    |||||||| ||||||||||| || ||||||||||| |||||||| || ||||||||||| || || |  || ||||| || ||| | ||||||||||| |  |
------------------------------------aatctcctattgcatggttccttacctgctttgatttcaatg-----ttttagttgtctattacttcccaccttttttacttttttgtgaacttaattggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC

upper sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttattttt----ttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
                         || |   || |  | ||    ||| |||    |    | || | |  ||       || || |   ||  || | |||  || |||   |     |||| || | | |    |  |||| ||  | |||||||| || |||||||||||||||||||| || ||||||||||| || ||||  || ||  | || ||| |||| || || || |  |
-------------------------gtacatgctataatgtctc--ctggttttggttgaattgttagctgccacatcttgatttcat---cattttatttgt--tgaatcccggctgattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC

upper sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
gtttgtcgagcagctattcagtggtgtcctctctgtggt-ctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgca----agttgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
|||||     ||   |  ||||  ||  || |   || | ||  ||| | |  ||  | ||  |    ||  |  | |      ||    | ||    | |||| |       || ||    ||   | |  ||      ||||||||| | |||||||| || ||||||||||| || ||||| || ||||| |||||||| ||||  || ||||| || ||| | ||||||||||| |  |
gtttgctt--cactcacccagt--tgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaa--cagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC

upper sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ31038 (Selaginella moellendorffii), 3'ss of exon 5
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
                                                                              || | |||| | |    |||  |   ||  |  ||  ||   ||   || |  |   ||||| || ||||| ||||| || ||||||||||| |||||||| ||||||||||||   || ||   ||| || || || ||  |||| || |||||  | |
--------------------------------------------------------------------------gtgcaagaactcgatcgt--tttgatttggatccagtttctaagcattggattgtgctgg-cagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
                                                                      | ||||||         ||||  | |||  |  |  || ||| || | ||  | ||  |   |  ||||| || ||||| ||||| || ||||||||||| |||||||| ||||||||||||   || ||   ||| || || || ||  |||| || |||||  | |
---------------------------------------------------------------------gtacaagaactcgatcattttg--atttggatcca--gtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 5
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
                                                                              || | |||| | |    |||  |   ||  |  ||  ||   ||   || || |   ||||| || ||||| ||||| || ||||||||||| |||||||| ||||||||||||   || ||   ||| || || || ||  |||| || |||||  | |
--------------------------------------------------------------------------gtgcaagaactcgatcgt--tttgatttggatccagtttctaagcattggattgttctgg-cagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208344994|gb|DC925404.1|DC925404
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162217138|gb|FC392502.1|FC392502
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|22132093|gb|BQ826977.1|BQ826977
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162246681|gb|FC425274.1|FC425274
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162220065|gb|FC395385.1|FC395385
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|18341437|gb|BJ173472.1|BJ173472
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|19789239|gb|BQ041187.1|BQ041187
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|7584291|gb|AW700187.1|AW700187
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162259170|gb|FC435203.1|FC435203
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|67704473|gb|BJ964706.1|BJ964706
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162184011|gb|FC359381.1|FC359381
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162254129|gb|FC429653.1|FC429653
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|37823259|gb|BJ581325.1|BJ581325
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162230909|gb|FC406748.1|FC406748
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|67699455|gb|BJ959688.1|BJ959688
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|67693697|gb|BJ953930.1|BJ953930
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|18340896|gb|BJ172927.1|BJ172927
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162231360|gb|FC406783.1|FC406783
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162211610|gb|FC387690.1|FC387690
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|15320201|gb|BI487912.1|BI487912
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|67722987|gb|BJ973246.1|BJ973246
EST:     CGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162220064|gb|FC395384.1|FC395384
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162250244|gb|FC425495.1|FC425495
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162250245|gb|FC425496.1|FC425496
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162279949|gb|FC456135.1|FC456135
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162217139|gb|FC392503.1|FC392503
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162153703|gb|FC329106.1|FC329106
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162246682|gb|FC425275.1|FC425275
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|67721196|gb|BJ971455.1|BJ971455
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|208367708|gb|DC947386.1|DC947386
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGGCCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|7067440|gb|AW497295.1|AW497295
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|37845934|gb|BJ603942.1|BJ603942
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|208379087|gb|DC911612.1|DC911612
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGG
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGG
EST: gi|208389218|gb|DC933246.1|DC933246
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGGCCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|18361337|gb|BJ193403.1|BJ193403
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|7147663|gb|AW509634.1|AW509634
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAA
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAA
EST: gi|162230908|gb|FC406747.1|FC406747
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162203874|gb|FC379971.1|FC379971
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|67570422|gb|BJ943246.1|BJ943246
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGAC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGAC
EST: gi|162203875|gb|FC379972.1|FC379972
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
EST: gi|162153702|gb|FC329105.1|FC329105
EST:     CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAG                         GGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC
genomic: CCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 35 (downstream exon)
Score: 28

AGCCAAGTCTATGAAGTTCAAGGATGGCTACATGATTTCATCAGGAAGCCCCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgag ... tttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC
                                     tttcgttatttttttc  CT-rich tract
                                     tttcgttattttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG