1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaatttttcactaagtatttagattgtgtgagctgtatgatagtggatttatactcgccgtcggaattcatcggtttcttcattcgtatgtgaatgcagATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGTGATGAGAAGATGAAGGCTAGCAACAATGTGAAGCACTTGTTGCTTCCAG
species | Physcomitrella patens |
transcript | PP1S40_169V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAG ATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGTEST: gi|162199364|gb|FC374030.1|FC374030
genomic: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAGgtatagttca ... gtgaatgcagATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGT
EST: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAG ATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGTEST: gi|100392613|gb|BY971797.1|BY971797
genomic: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAGgtatagttca ... gtgaatgcagATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGT
EST: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAG ATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGTEST: gi|162165912|gb|FC341262.1|FC341262
genomic: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAGgtatagttca ... gtgaatgcagATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGT
EST: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAG ATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGTEST: gi|162166233|gb|FC342631.1|FC342631
genomic: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAGgtatagttca ... gtgaatgcagATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGT
EST: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAG ATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGTEST: gi|162201473|gb|FC377407.1|FC377407
genomic: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAGgtatagttca ... gtgaatgcagATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGT
EST: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAG ATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGTEST: gi|162167302|gb|FC342290.1|FC342290
genomic: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAGgtatagttca ... gtgaatgcagATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGT
EST: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAG ATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGTEST: gi|162163230|gb|FC339348.1|FC339348
genomic: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAGgtatagttca ... gtgaatgcagATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGT
EST: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAG ATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGTEST: gi|162168031|gb|FC344345.1|FC344345
genomic: AGGTTCAAACTCTACTTTTTAGTGCAACTCTGCCCACGTGGGTTCAACAGgtatagttca ... gtgaatgcagATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGT
EST: GCAACTCTGCCCACGTGGGTTCAACAG ATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGT
genomic: GCAACTCTGCCCACGTGGGTTCAACAGgtatagttca ... gtgaatgcagATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGT
ggatttatactcgccgtcggaattcatcggtttcttcattcgtatgtgaatgcagATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGTGATGAGAAGATGAAGGCTAGCAACAATGTGAAGCACTTGTTGCTTCCAG
aattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatttttcactaagtatttagattgtgtgagctgtatgatagtggatttatactcgccgtcggaattcatcggtttcttcattcgtatgtgaatgcagATTGCCCGTAAGTTTTTGAAGCCTGAGAGGAGAACTGTTGACTTGGTTGGTGATGAGAAGATGAAGGCTAGCAACAATGTGAAGCACTTGTTGCTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC