1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaaaacatctaaaccatgatctattctgctgttactattttcattgtctgccttgggacagcgcttaatgatgtggcttttgattgcagGGTTTTGAAAAGATGATTTCTGGAATGTATTTGGGTGATTGTGTGAGGCGAGTGCTTGTCAGGATGGCACAAGAAGCTGGCATCTTCGGTCCCCATGTTC
species | Physcomitrella patens |
transcript | PP1S401_23V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGAGAGCCTCCATCCAGGAGAATAT GGTTTTGAAAAGATGATTTCTGGAATGTATTTGGGTGATTGTGTGAGGCGAEST: gi|100362815|gb|BY947542.1|BY947542
genomic: CGAGAGCCTCCATCCAGGAGAATATgtaaaaacat ... ttgattgcagGGTTTTGAAAAGATGATTTCTGGAATGTATTTGGGTGATTGTGTGAGGCGA
EST: CCTATGTGGATGAGTTATTGGATAGCGAGAGCCTCCATCCAGGAGAATAT GGTTTTGAAAAGATGATTTCTGGAATGTATTTGGGTGATTGTGTGAGGCGAEST: gi|162175737|gb|FC352039.1|FC352039
genomic: CCTATGTGGATGAGTTATTGGATAGCGAGAGCCTCCATCCAGGAGAATATgtaaaaacat ... ttgattgcagGGTTTTGAAAAGATGATTTCTGGAATGTATTTGGGTGATTGTGTGAGGCGA
EST: CCTATGTGGATGAGTTATTGGATAGCGAGAGCCTCCATCCAGGAGAATAT GGTTTTGAAAAGATGATTTCTGGAATGTATTTGGGTGATTGTGTGAGGCGA
genomic: CCTATGTGGATGAGTTATTGGATAGCGAGAGCCTCCATCCAGGAGAATATgtaaaaacat ... ttgattgcagGGTTTTGAAAAGATGATTTCTGGAATGTATTTGGGTGATTGTGTGAGGCGA
ctattttcattgtctgccttgggacagcgcttaatgatgtggcttttgattgcagGGTTTTGAAAAGATGATTTCTGGAATGTATTTGGGTGATTGTGTGAGGCGAGTGCTTGTCAGGATGGCACAAGAAGCTGGCATCTTCGGTCCCCATGTTC
ttttgat putative branch site (score: 4)
ctttt CT-rich tract
ttaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaacatctaaaccatgatctattctgctgttactattttcattgtctgccttgggacagcgcttaatgatgtggcttttgattgcagGGTTTTGAAAAGATGATTTCTGGAATGTATTTGGGTGATTGTGTGAGGCGAGTGCTTGTCAGGATGGCACAAGAAGCTGGCATCTTCGGTCCCCATGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG