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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtctcagatagcttcttagttgaaacatgtgctctgctggtttataataaattgtcattctttgttgacattgagttgggatccactactgtaccctgagacatgtgaatcgtctgagataacttgtccagGTTCAAATCTTCTTATCGACAACAATGGCATTTTGAAGCTTGCCGACTTCGGGCTTGCAAGGTCTTTCTCCAACGATCAGAATGGTCAACCATTAACTAA

Basic information

species Physcomitrella patens
transcript PP1S3_535V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162186337|gb|FC361645.1|FC361645
EST:     AGGTCTACATTACTGCCATGTGAACCAAGTGCTTCACAGGGATATCAAAG                         GTTCAAATCTTCTTATCGACAACAATGGCATTTTGAAGCTTGCCGACTTCG
genomic: AGGTCTACATTACTGCCATGTGAACCAAGTGCTTCACAGGGATATCAAAGgtactgtctc ... acttgtccagGTTCAAATCTTCTTATCGACAACAATGGCATTTTGAAGCTTGCCGACTTCG
EST: gi|162156181|gb|FC332556.1|FC332556
EST:     AGGTCTACATTACTGCCATGTGAACCAAGTGCTTCACAGGGATATCAAAG                         GTTCAAATCTTCTTATCGACAACAATGGCATTTTGAAGCTTGCCGACTTCG
genomic: AGGTCTACATTACTGCCATGTGAACCAAGTGCTTCACAGGGATATCAAAGgtactgtctc ... acttgtccagGTTCAAATCTTCTTATCGACAACAATGGCATTTTGAAGCTTGCCGACTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggatccactactgtaccctgagacatgtgaatcgtctgagataacttgtccagGTTCAAATCTTCTTATCGACAACAATGGCATTTTGAAGCTTGCCGACTTCGGGCTTGCAAGGTCTTTCTCCAACGATCAGAATGGTCAACCATTAACTAA
                                        agataac  putative branch site (score: 3)
                                              cttgtcc  CT-rich tract
                                          ataactt  TA-rich tract