1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaaatcatatggataatttttctggaagtattggtttgtgtaccctattctgtgaattcctacgtaatcttctaccagccagcattctattttcgtttcgtttatctatgacactgaatacattatttgatgtgcttatgcagAGTGTACCACCTACAATTTTGGATAATTACGAGTTGGTTAGTATGAACCTGGAGTATAGGAGAGAGTGTGGACAGTCTGACGTGGTGCAATCAATGGCCA
species | Physcomitrella patens |
transcript | PP1S3_298V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATATGAACCAGCATGTGAACAACGTGAAGTACATTGGTTGGATGATGGAG AGTGTACCACCTACAATTTTGGATAATTACGAGTTGGTTAGTATGAACCTGEST: gi|67693823|gb|BJ954056.1|BJ954056
genomic: ATATGAACCAGCATGTGAACAACGTGAAGTACATTGGTTGGATGATGGAGgtaaaatcat ... gcttatgcagAGTGTACCACCTACAATTTTGGATAATTACGAGTTGGTTAGTATGAACCTG
EST: ATATGAACCAGCATGTGAACAACGTGAAGTACATTGGTTGGATGATGGAG AGTGTACCACCTACAATTTTGGATAATTACGAGTTGGTTAGTATGAACCTG
genomic: ATATGAACCAGCATGTGAACAACGTGAAGTACATTGGTTGGATGATGGAGgtaaaatcat ... gcttatgcagAGTGTACCACCTACAATTTTGGATAATTACGAGTTGGTTAGTATGAACCTG
attttcgtttcgtttatctatgacactgaatacattatttgatgtgcttatgcagAGTGTACCACCTACAATTTTGGATAATTACGAGTTGGTTAGTATGAACCTGGAGTATAGGAGAGAGTGTGGACAGTCTGACGTGGTGCAATCAATGGCCA
atttgat putative branch site (score: 9)
aatacattatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatcatatggataatttttctggaagtattggtttgtgtaccctattctgtgaattcctacgtaatcttctaccagccagcattctattttcgtttcgtttatctatgacactgaatacattatttgatgtgcttatgcagAGTGTACCACCTACAATTTTGGATAATTACGAGTTGGTTAGTATGAACCTGGAGTATAGGAGAGAGTGTGGACAGTCTGACGTGGTGCAATCAATGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA