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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtactctactgcttattatattgttctgatattgctcaagcaagatttatttgagagagccctgtttttgttctgctcagtaatgtagcctgcttgacatctcgatcttatagaaacgatggcgaagtagggaataaatgcttggaacattatgatcatcttgctctaatatttgcacctcaacgcattgtgcagAGTCCTTGCAAACCTCTAGTGATTGCCCTGTTCTCTGTGGTGGGCATGTCGCATATCAGCGTAGTTCGCTTTTTCACTAAACTCCAGACGCAACGAGGTT

Basic information

species Physcomitrella patens
transcript PP1S395_51V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208367438|gb|DC954926.1|DC954926
EST:     TTAGTGCATTGCTTTCAACTCTGGTGGCAATAATTGCGTGGGAGTCCAAG                         AGTCCTTGCAAACCTCTAGTGATTGCCCTGTTCTCTGTGGTGGGCATGTCG
genomic: TTAGTGCATTGCTTTCAACTCTGGTGGCAATAATTGCGTGGGAGTCCAAGgttggtactc ... cattgtgcagAGTCCTTGCAAACCTCTAGTGATTGCCCTGTTCTCTGTGGTGGGCATGTCG
EST: gi|37847012|gb|BJ605020.1|BJ605020
EST:     CAATAATTGCGTGGGAGTCCAAG                         AGTCCTTGCAAACCTCTAGTGATTGCCCTGTTCTCTGTGGTGGGCATGTCG
genomic: CAATAATTGCGTGGGAGTCCAAGgttggtactc ... cattgtgcagAGTCCTTGCAAACCTCTAGTGATTGCCCTGTTCTCTGTGGTGGGCATGTCG
EST: gi|37846087|gb|BJ604095.1|BJ604095
EST:     TTAGTGCATTGCTTTCAACTCTGGTGGCAATAATTGCGTGGGAGTCCAAG                         AGTCCTTGCAAACCTCTAGTGATTGCCCTGTTCTCTGTGGTGGGCATGTCG
genomic: TTAGTGCATTGCTTTCAACTCTGGTGGCAATAATTGCGTGGGAGTCCAAGgttggtactc ... cattgtgcagAGTCCTTGCAAACCTCTAGTGATTGCCCTGTTCTCTGTGGTGGGCATGTCG
EST: gi|208372264|gb|DC948067.1|DC948067
EST:     TTAGTGCATTGCTTTCAACTCTGGTGGCAATAATTGCGTGGGAGTCCAAG                         AGTCCTTGCAAACCTCTAGTGATTGCCCTGTTCTCTGTGGTGGGCATGTCG
genomic: TTAGTGCATTGCTTTCAACTCTGGTGGCAATAATTGCGTGGGAGTCCAAGgttggtactc ... cattgtgcagAGTCCTTGCAAACCTCTAGTGATTGCCCTGTTCTCTGTGGTGGGCATGTCG
EST: gi|37832017|gb|BJ590029.1|BJ590029
EST:     TTAGTGCATTGCTTTCAACTCTGGTGGCAATAATTGCGTGGGAGTCCAAG                         AGTCCTTGCAAACCTCTAGTGATTGCCCTGTTCTCTGTGGTGGGCATGTCG
genomic: TTAGTGCATTGCTTTCAACTCTGGTGGCAATAATTGCGTGGGAGTCCAAGgttggtactc ... cattgtgcagAGTCCTTGCAAACCTCTAGTGATTGCCCTGTTCTCTGTGGTGGGCATGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggaacattatgatcatcttgctctaatatttgcacctcaacgcattgtgcagAGTCCTTGCAAACCTCTAGTGATTGCCCTGTTCTCTGTGGTGGGCATGTCGCATATCAGCGTAGTTCGCTTTTTCACTAAACTCCAGACGCAACGAGGTT
                       ctctaat  putative branch site (score: 3)
                        tctaatattt  TA-rich tract