1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatcacgtgtgggttttgcatagatcatagtaaacatcttggtatttaaggaggaattataaggaatgaaaagtgacttgattacgatttcttgtggcagGGACACACTCATAATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAAACAATAACCACG
species | Physcomitrella patens |
transcript | PP1S395_19V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGTTGCACGAAGCGCACTCAATGCAGCACGGGACGGCGAGAAAGAT GGACACACTCATAATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAAEST: gi|100387138|gb|BY951537.1|BY951537
genomic: TTTTGGTTGCACGAAGCGCACTCAATGCAGCACGGGACGGCGAGAAAGATgtaagcgggt ... cttgtggcagGGACACACTCATAATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAA
EST: TTTGGTTGCACGAAAGCGCACTCA-TGCAGCACGGGACGGCGAGAAAGAT GGACACACTCATAATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAA
genomic: TTTGGTTGCACGAA-GCGCACTCAATGCAGCACGGGACGGCGAGAAAGATgtaagcgggt ... cttgtggcagGGACACACTCATAATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAA
ttaaggaggaattataaggaatgaaaagtgacttgattacgatttcttgtggcagGGACACACTCATAATGCGGAAACACGAGGGTTATGTCTTTCTGAGGAACAAACAATAACCACG
acttgat putative branch site (score: 11)
tttcttgt putative PPT
aattataa TA-rich tract