1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgttcatgtcaaagcttgtgttgttgtgttctagctttccgctatttacagtttttgttcaacttcgtcttgctcagctggaaagcgctttgaatgcagGGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGAGTCGACAGAAGAGATTTTGAACGCAGCTGTCAAATATGCGCTGAAGCGC
species | Physcomitrella patens |
transcript | PP1S392_18V6.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACCACAGTCTTTGTTGCAG GGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGAEST: gi|208365427|gb|DC950894.1|DC950894
genomic: CACCACAGTCTTTGTTGCAGgtagtgtaca ... ttgaatgcagGGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGA
EST: GAATGGGCTTTCAGCGCGCCGTCTCCAGCCCACCACAGTCTTTGTTGCAG GGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGAEST: gi|67694858|gb|BJ955091.1|BJ955091
genomic: GAATGGACTTTCAGCGCGCCGTCTCCAGCCCACCACAGTCTTTGTTGCAGgtagtgtaca ... ttgaatgcagGGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGA
EST: GAATGGACTTTCAGCGCGCCGTCTCCAGCCCACCACAGTCTTTGTTGCAG GGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGAEST: gi|162276812|gb|FC452494.1|FC452494
genomic: GAATGGACTTTCAGCGCGCCGTCTCCAGCCCACCACAGTCTTTGTTGCAGgtagtgtaca ... ttgaatgcagGGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGA
EST: GAATGGACTTTCAGCGCGCCGTCTCCAGCCCAC-ACAGTCTTTGTTGCAG GGGTCTGATTCCACTTCTGGCEST: gi|162276811|gb|FC452493.1|FC452493
genomic: GAATGGACTTTCAGCGCGCCGTCTCCAGCCCACCACAGTCTTTGTTGCAGgtagtgtaca ... ttgaatgcagGGGTCTGATTCCACTTCTGGC
EST: CCAGCCCACCACAGTCTTTGTTGCAG GGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGAEST: gi|37845527|gb|BJ603535.1|BJ603535
genomic: CCAGCCCACCACAGTCTTTGTTGCAGgtagtgtaca ... ttgaatgcagGGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGA
EST: GAATGGACTTTCAGCGCGCCGTCTCCAGCCCACCACAGTCTTTGTTGCAG GGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGAEST: gi|162168897|gb|FC345371.1|FC345371
genomic: GAATGGACTTTCAGCGCGCCGTCTCCAGCCCACCACAGTCTTTGTTGCAGgtagtgtaca ... ttgaatgcagGGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGA
EST: GAATGGACTTTCAGCGCGCCGTCTCCAGCCCACCACAGTCTTTGTTGCAG GGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGAEST: gi|18339365|gb|BJ171392.1|BJ171392
genomic: GAATGGACTTTCAGCGCGCCGTCTCCAGCCCACCACAGTCTTTGTTGCAGgtagtgtaca ... ttgaatgcagGGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGA
EST: GAATGGACTTTCAGCGCGCCGTCTCCAGCCCACCACAGTCTTTGTTGCAG GGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGA
genomic: GAATGGACTTTCAGCGCGCCGTCTCCAGCCCACCACAGTCTTTGTTGCAGgtagtgtaca ... ttgaatgcagGGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGA
tttacagtttttgttcaacttcgtcttgctcagctggaaagcgctttgaatgcagGGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGAGTCGACAGAAGAGATTTTGAACGCAGCTGTCAAATATGCGCTGAAGCGC
tttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttcatgtcaaagcttgtgttgttgtgttctagctttccgctatttacagtttttgttcaacttcgtcttgctcagctggaaagcgctttgaatgcagGGGTCTGATTCCACTTCTGGCGGAAGGCTCTGCAAAGGCCACTGATTCAGAGTCGACAGAAGAGATTTTGAACGCAGCTGTCAAATATGCGCTGAAGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC