Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattctcaacctatcaacgcaatatgaaatcgtctccttttccttctgtcttcacaataccttttatagtggtcacctggctaggagatcttgacgtcaactgttctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG

Basic information

species Physcomitrella patens
transcript PP1S38_329V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S38_329V6.2 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G090738_T01 (Zea mays), 3'ss of exon 4
gtacattctcaacctatcaacgcaatatgaaatcgtctccttttccttctgtcttcacaataccttttatagtggtcacctggctaggagatcttgacgtcaactgttctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG
||| |||    |  | |  |   ||| | |||| ||||  | || ||        |||| ||  |||| || || | ||             |||| |  || ||  |        ||| || ||||||||||||||||||||||||||   | | |||| |   || ||||||||||||||||  || || |    |
gtatattt---atgtctgcaaagaatgt-aaattgtctattgttactaag-----caca-tatattttgtattgctaactc-----------cttgcccacatcttct--------agCCTACTGCACTGGTCTTCTTTTGGCTCGTCGTGTTCTCAAGATCCGTGATTTGGATCAGGAGTATGAGGGCAATGTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374993|gb|DC956403.1|DC956403
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGCCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208389889|gb|DC937720.1|DC937720
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|162215586|gb|FC391665.1|FC391665
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|100372326|gb|BY985544.1|BY985544
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCATTGGTCTACTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208389794|gb|DC937429.1|DC937429
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|18354041|gb|BJ186096.1|BJ186096
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTG
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTG
EST: gi|19789832|gb|BQ041538.1|BQ041538
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|18351731|gb|BJ183783.1|BJ183783
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|18355260|gb|BJ187319.1|BJ187319
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|162232208|gb|FC408057.1|FC408057
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|162239200|gb|FC416482.1|FC416482
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208364389|gb|DC950690.1|DC950690
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|19779720|gb|BQ039469.1|BQ039469
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|162233764|gb|FC410030.1|FC410030
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|162208344|gb|FC384656.1|FC384656
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|67573430|gb|BJ946254.1|BJ946254
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|19788553|gb|BQ040790.1|BQ040790
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCTTCTACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|19781204|gb|BQ039665.1|BQ039665
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|22491783|gb|BU051706.1|BU051706
EST:     ATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: ATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|162208026|gb|FC384221.1|FC384221
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|100430202|gb|BY959750.1|BY959750
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208389761|gb|DC938323.1|DC938323
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208366885|gb|DC951372.1|DC951372
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208349865|gb|DC905989.1|DC905989
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|67716531|gb|BJ966791.1|BJ966791
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208397433|gb|DC916359.1|DC916359
EST:     AGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: AGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|162273383|gb|FC449832.1|FC449832
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|18373232|gb|BJ204834.1|BJ204834
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208346882|gb|DC905426.1|DC905426
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208386339|gb|DC932835.1|DC932835
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGCCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|18329908|gb|BJ161914.1|BJ161914
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|67709595|gb|BJ965411.1|BJ965411
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|19788241|gb|BQ040741.1|BQ040741
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|67726492|gb|BJ976751.1|BJ976751
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208391477|gb|DC937625.1|DC937625
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|18347318|gb|BJ179364.1|BJ179364
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|67696812|gb|BJ957045.1|BJ957045
EST:     CGATAT-GNTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|67717988|gb|BJ968247.1|BJ968247
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|67716844|gb|BJ967103.1|BJ967103
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208380043|gb|DC914593.1|DC914593
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|15728298|gb|BI740717.1|BI740717
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|67725048|gb|BJ975307.1|BJ975307
EST:     GAGCTCCCTCGATATGG-TTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: GAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208382921|gb|DC928346.1|DC928346
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208345094|gb|DC909456.1|DC909456
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|162266658|gb|FC442837.1|FC442837
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208355830|gb|DC930193.1|DC930193
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|162217825|gb|FC393613.1|FC393613
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|100449524|gb|CJ973802.1|CJ973802
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|208365341|gb|DC950784.1|DC950784
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
EST: gi|162275294|gb|FC451478.1|FC451478
EST:     CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTG                         CATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT
genomic: CGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 30 (upstream exon), 34 (downstream exon)
Score: 65

ACCTATGCGACGCTCGCTGGAGACATCGTCCTCACCTCTGCCTATGCCCACGAGCTCCCTCGATATGGTTTGAAGGGCGGTCTCACCAACTATGCTGCTGgtacattctc ... ctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttatagtggtcacctggctaggagatcttgacgtcaactgttctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG
                            tcttgac  putative branch site (score: 65)
                                        ctgttct  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacattctcaacctatcaacgcaatatgaaatcgtctccttttccttctgtcttcacaataccttttatagtggtcacctggctaggagatcttgacgtcaactgttctgtatgcagCATATTGCACTGGTCTTCTTTTGGCTCGTCGGCATTTGAAGAACTTCGAGTTGGATCAGGAGTATGTTGGGAACGAGACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC