1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcgtcattctcactatgttttgaactaaccccaaccacatgctctactggcttcccacagtgtccaagtccgatgacttatgaattgatgctgtgtaagttaacttggttctgccaacaagggactagggtttgggcattccagcatgatctaagtttcttttcactgtgaatggaatgcttcagGTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGTAGTTTATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGG
species | Physcomitrella patens |
transcript | PP1S38_328V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACG GTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGTEST: gi|208397759|gb|DC911996.1|DC911996
genomic: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACGgtgcgtcatt ... aatgcttcagGTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGT
EST: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACG GTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGTEST: gi|162267081|gb|FC443312.1|FC443312
genomic: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACGgtgcgtcatt ... aatgcttcagGTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGT
EST: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACG GTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGTEST: gi|100370853|gb|BY948549.1|BY948549
genomic: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACGgtgcgtcatt ... aatgcttcagGTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGT
EST: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACG GTATGCCTCATTAGCGCCGCTATATTATAGNAG-TGCAGCAGCGGCGGTTGEST: gi|162276874|gb|FC452556.1|FC452556
genomic: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACGgtgcgtcatt ... aatgcttcagGTATGCCTCATTAGCGCCGCTATATTATAG-AGGTGCAGCAGCGGCGGTTG
EST: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACG GTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGTEST: gi|7648245|gb|AW739228.1|AW739228
genomic: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACGgtgcgtcatt ... aatgcttcagGTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGT
EST: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACG GTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAACAGCGGCGGATGTEST: gi|162152195|gb|FC328174.1|FC328174
genomic: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACGgtgcgtcatt ... aatgcttcagGTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGT
EST: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACG GTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGT
genomic: GATTCTACCAGCGTAAAATTTGAGATATGGGACACTGCAGGTCAAGAACGgtgcgtcatt ... aatgcttcagGTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGT
tttgggcattccagcatgatctaagtttcttttcactgtgaatggaatgcttcagGTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGTAGTTTATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGG
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtcattctcactatgttttgaactaaccccaaccacatgctctactggcttcccacagtgtccaagtccgatgacttatgaattgatgctgtgtaagttaacttggttctgccaacaagggactagggtttgggcattccagcatgatctaagtttcttttcactgtgaatggaatgcttcagGTATGCCTCATTAGCGCCGCTATATTATAGAGGTGCAGCAGCGGCGGTTGTAGTTTATGACATCACCAATCCAGAGACATTCTTGAAAGCTCAATTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA