1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gaagtgctggtttacgaaatagttcaacatgtcaaagaataaatggataagtttcgaaaactcttagtgtcaatcttaactgttgattgcctggacccagATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGACGTTTTGCAGCCTGGCACTGCTATGCTTGCTGCAGGCTACTGTATGTATG
species | Physcomitrella patens |
transcript | PP1S385_43V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACG ATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGANGACEST: gi|162247229|gb|FC423053.1|FC423053
genomic: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACGgtaaattatt ... ctggacccagATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGAC
EST: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACG ATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGACEST: gi|100385375|gb|BY950967.1|BY950967
genomic: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACGgtaaattatt ... ctggacccagATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGAC
EST: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACG ATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGACEST: gi|100452183|gb|CJ975143.1|CJ975143
genomic: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACGgtaaattatt ... ctggacccagATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGAC
EST: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACG ATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGACEST: gi|100390324|gb|BY952732.1|BY952732
genomic: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACGgtaaattatt ... ctggacccagATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGAC
EST: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACG ATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGACEST: gi|100352580|gb|BY945343.1|BY945343
genomic: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACGgtaaattatt ... ctggacccagATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGAC
EST: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACG ATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGACEST: gi|100411169|gb|BY992231.1|BY992231
genomic: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACGgtaaattatt ... ctggacccagATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGAC
EST: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACG ATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGACEST: gi|18372082|gb|BJ203684.1|BJ203684
genomic: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACGgtaaattatt ... ctggacccagATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGAC
EST: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACG ATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTC
genomic: ATCCACTTGATGGATCTTCCAACATTGATTGTGGTGTATCTATTGGAACGgtaaattatt ... ctggacccagATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTC
gataagtttcgaaaactcttagtgtcaatcttaactgttgattgcctggacccagATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGACGTTTTGCAGCCTGGCACTGCTATGCTTGCTGCAGGCTACTGTATGTATG
aatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagtgctggtttacgaaatagttcaacatgtcaaagaataaatggataagtttcgaaaactcttagtgtcaatcttaactgttgattgcctggacccagATTTTTGGAATCTACATGCTTAAGGAAGGAGCCTCAGGGACGGTTGAGGACGTTTTGCAGCCTGGCACTGCTATGCTTGCTGCAGGCTACTGTATGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG