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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtttaaattttgcgtgctactttccactgatactttgatgttagaaaatagtactttttctcattggtgtcgaattgtatgcttttagaaagctgcgtctagtctaacacccttttaaagaagttgataagattcctcgagtctgatcagtttttcaattgttttgtttgagcagTGGAATTTTCGTGTGGGTTTTACACCTCGAGAAGGATTGGTCATTCACACAGTTGCCTACTGCGATGGCAGTCGCGGCAGGCGCTCTGTGGCACATCGCT

Basic information

species Physcomitrella patens
transcript PP1S36_16V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162257611|gb|FC433745.1|FC433745
EST:     CGGAAGGACCCAGCTTTCGAGTTAATGGTCACGCAGTGGAGTGGCAGAAG                         TGGAATTTTCGTGTGGGTTTTACACCTCGAGAAGGATTGGTCATTCACACA
genomic: CGGAAGGACCCAGCTTTCGAGTTAATGGTCACGCAGTGGAGTGGCAGAAGgttgtttaaa ... gtttgagcagTGGAATTTTCGTGTGGGTTTTACACCTCGAGAAGGATTGGTCATTCACACA
EST: gi|162189755|gb|FC366809.1|FC366809
EST:     CGGAAGGACCCAGCTTTCGAGTTAATGGTCACGCAGTGGAGTGGCAGAAG                         TGGAATTTTCGTGTGGGTTTTACACCTCGAGAAGGATTGGTCATTCACACA
genomic: CGGAAGGACCCAGCTTTCGAGTTAATGGTCACGCAGTGGAGTGGCAGAAGgttgtttaaa ... gtttgagcagTGGAATTTTCGTGTGGGTTTTACACCTCGAGAAGGATTGGTCATTCACACA
EST: gi|162193463|gb|FC371003.1|FC371003
EST:     AGTTAATGGTCACGCAGTGGAGTGGCAGAAG                         TGGAATTTTCGTGTGGGTTTTACACCTCGAGAAGGATTGGTCATTCACACA
genomic: AGTTAATGGTCACGCAGTGGAGTGGCAGAAGgttgtttaaa ... gtttgagcagTGGAATTTTCGTGTGGGTTTTACACCTCGAGAAGGATTGGTCATTCACACA
EST: gi|162155228|gb|FC331191.1|FC331191
EST:     CGGAAGGACCCAGCTTTCGAGTTAATGGTCACGCAGTGGAGTGGCAGAAG                         TGGAATTTTCGTGTGGGTTTTACACCTCGAGAAGGATTGGTCATTCACACA
genomic: CGGAAGGACCCAGCTTTCGAGTTAATGGTCACGCAGTGGAGTGGCAGAAGgttgtttaaa ... gtttgagcagTGGAATTTTCGTGTGGGTTTTACACCTCGAGAAGGATTGGTCATTCACACA
EST: gi|162263285|gb|FC439080.1|FC439080
EST:     CGGAAGGACCCAGCTTTCGAGTTAATGGTCACGCAGTGGAGTGGCAGAAG                         TGGAATTTTCGTGTGGGTTTTACACCTCGAGAAGGATTGGTCATTCACACA
genomic: CGGAAGGACCCAGCTTTCGAGTTAATGGTCACGCAGTGGAGTGGCAGAAGgttgtttaaa ... gtttgagcagTGGAATTTTCGTGTGGGTTTTACACCTCGAGAAGGATTGGTCATTCACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttgataagattcctcgagtctgatcagtttttcaattgttttgtttgagcagTGGAATTTTCGTGTGGGTTTTACACCTCGAGAAGGATTGGTCATTCACACAGTTGCCTACTGCGATGGCAGTCGCGGCAGGCGCTCTGTGGCACATCGCT
                    gtctgat  putative branch site (score: 4)
                                         ttttgttt  putative PPT
                              tttttcaattgtttt  TA-rich tract