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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caggagattttggatgctgtgtgcatgaaagcgtgtttcttatcttaacgtgctctttgtgttgggaggcctaatttatggaatattgcttcctgcgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTTGTGCCGATTCCATTGCTAGATGAGTTTATGGAAAATGCTCGGCTTTTTA

Basic information

species Physcomitrella patens
transcript PP1S363_21V6.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67720213|gb|BJ970472.1|BJ970472
EST:     TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAG                         CTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
genomic: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAGgtacgactcg ... tcctgcgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
EST: gi|162194164|gb|FC369481.1|FC369481
EST:     TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAG                         CTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
genomic: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAGgtacgactcg ... tcctgcgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
EST: gi|67723980|gb|BJ974239.1|BJ974239
EST:     TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAG                         CTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
genomic: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAGgtacgactcg ... tcctgcgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
EST: gi|162194165|gb|FC369482.1|FC369482
EST:     TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAG                         CTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
genomic: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAGgtacgactcg ... tcctgcgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
EST: gi|37845565|gb|BJ603573.1|BJ603573
EST:     TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAG                         CTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
genomic: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAGgtacgactcg ... tcctgcgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacgtgctctttgtgttgggaggcctaatttatggaatattgcttcctgcgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTTGTGCCGATTCCATTGCTAGATGAGTTTATGGAAAATGCTCGGCTTTTTA
                                        ttgcttcct  CT-rich tract
                          taatttatggaatatt  TA-rich tract