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gtacagttttattgaaaggacacaatatttttaaaaataaaatggatatattgggttctagttttaaaaagttgtcatctagtggagcttattttcctcttgctgtgggttggcagGTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGATCCCGAGATCGGCAAGCTTGCACAGAGGATCTTGATCAATCCTCGTAAAATTGATT
species | Physcomitrella patens |
transcript | PP1S35_94V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTACATTGGTCTTGAGTTCAGTGATGTTTACACTGCCCTTGGAAGCGAG GTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGATCCCGAGEST: gi|162185503|gb|FC362572.1|FC362572
genomic: GTTACATTGGTCTTGAGTTCAGTGATGTTTACACTGCCCTTGGAAGCGAGgtacagtttt ... gggttggcagGTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGATCCCGAG
EST: TGTTTACACTGCCCTTGGAAGCGAG GTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGATCCCGAGEST: gi|162167619|gb|FC343751.1|FC343751
genomic: TGTTTACACTGCCCTTGGAAGCGAGgtacagtttt ... gggttggcagGTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGATCCCGAG
EST: GTTACATTGGTCTTGAGTTCAGTGATGTTTACACTGCCCTTGGAAGCGAG GTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGATEST: gi|162166909|gb|FC343294.1|FC343294
genomic: GTTACATTGGTCTTGAGTTCAGTGATGTTTACACTGCCCTTGGAAGCGAGgtacagtttt ... gggttggcagGTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGAT
EST: GTTACATTGGTCTTGAGTTCAGTGATGTTTACACTGCCCTTGGAAGCGAG GTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGATCCCGAGEST: gi|162170369|gb|FC346774.1|FC346774
genomic: GTTACATTGGTCTTGAGTTCAGTGATGTTTACACTGCCCTTGGAAGCGAGgtacagtttt ... gggttggcagGTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGATCCCGAG
EST: GTTACATTGGTCTTGAGTTCAGTGATGTTTACACTGCCCTTGGAAGCGAG GTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCEST: gi|162189578|gb|FC365800.1|FC365800
genomic: GTTACATTGGTCTTGAGTTCAGTGATGTTTACACTGCCCTTGGAAGCGAGgtacagtttt ... gggttggcagGTCACGTTTGTTGAAGCTCTTGATGGTTTGATGC
EST: GTTACATTGGTCTTGAGTTCAGTGATGTTTACACTGCCCTTGGAAGCGAG GTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGATCCCGAG
genomic: GTTACATTGGTCTTGAGTTCAGTGATGTTTACACTGCCCTTGGAAGCGAGgtacagtttt ... gggttggcagGTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGATCCCGAG
ttttaaaaagttgtcatctagtggagcttattttcctcttgctgtgggttggcagGTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGATCCCGAGATCGGCAAGCTTGCACAGAGGATCTTGATCAATCCTCGTAAAATTGATT
ttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagttttattgaaaggacacaatatttttaaaaataaaatggatatattgggttctagttttaaaaagttgtcatctagtggagcttattttcctcttgctgtgggttggcagGTCACGTTTGTTGAAGCTCTTGATGGTTTGATGCCAGGCTTTGATCCCGAGATCGGCAAGCTTGCACAGAGGATCTTGATCAATCCTCGTAAAATTGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT