1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ccatctcgtagacatgttgtcccgctgcattgtgcacaaccttaatggcttgaatatcttcggcaatatgaagcgtgtgttgtgtttaaaatgaaaacagGACTGTGTCGCTGCTATTATTGAGGAAGCGAAATTCAAGAACATTCCTCTTGTGCTGGATGGG
species | Physcomitrella patens |
transcript | PP1S35_49V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGATTGTATTGTAATTGGTCCTGGCCTTGGTCGTGACCCCATACTTCTG GACTGTGTCGCTGCTATTATTGAGGAAGCGAAATTEST: gi|100360921|gb|BY946823.1|BY946823
genomic: TTGATTGTATTGTAATTGGTCCTGGCCTTGGTCGTGACCCCATACTTCTGgtacactcca ... atgaaaacagGACTGTGTCGCTGCTATTATTGAGGAAGCGAAATT
EST: TTGATTGTATTGTAATTGGTCCTGGCCTTGGTCGTGACCCCATACTTCTG GACTGTGTCGCTGCTATTATTGAGGAAGCGAAATTTCA-GAACATTCCNTCEST: gi|208391994|gb|DC941842.1|DC941842
genomic: TTGATTGTATTGTAATTGGTCCTGGCCTTGGTCGTGACCCCATACTTCTGgtacactcca ... atgaaaacagGACTGTGTCGCTGCTATTATTGAGGAAGCGAAATT-CAAGAACATTCC-TC
EST: TTGATTGTATTGTAATTGGTCCTGGCCTTGGTCGTGACCCCATACTTCTG GACTGTGTCGCTGCTATTATTGAGGAAGCGAAATTCA-GAACATTCCTCTTEST: gi|67507629|gb|BJ940510.1|BJ940510
genomic: TTGATTGTATTGTAATTGGTCCTGGCCTTGGTCGTGACCCCATACTTCTGgtacactcca ... atgaaaacagGACTGTGTCGCTGCTATTATTGAGGAAGCGAAATTCAAGAACATTCCTCTT
EST: TTGATTGTATTGTAATTGGTCCTGGCCTTGGTCGTGACCCCATACTTCTG GACTGTGTCGCTGCTATTATTGAGGAAG
genomic: TTGATTGTATTGTAATTGGTCCTGGCCTTGGTCGTGACCCCATACTTCTGgtacactcca ... atgaaaacagGACTGTGTCGCTGCTATTATTGAGGAAG
tggcttgaatatcttcggcaatatgaagcgtgtgttgtgtttaaaatgaaaacagGACTGTGTCGCTGCTATTATTGAGGAAGCGAAATTCAAGAACATTCCTCTTGTGCTGGATGGG
tgtttaaaatgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatctcgtagacatgttgtcccgctgcattgtgcacaaccttaatggcttgaatatcttcggcaatatgaagcgtgtgttgtgtttaaaatgaaaacagGACTGTGTCGCTGCTATTATTGAGGAAGCGAAATTCAAGAACATTCCTCTTGTGCTGGATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - cgctgca
- - - - - - - - - - - - - - - -gtgcaca