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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaccacttcccttggcagccttggatctctactgtggtgttgtccttccgttctattccatttctatctcaagcattatggttgttggaaatatcggcagGATGTTCCTACAGGAGAGCTACCTAGAAATTTGCTGCTAGCAGTTGATCGTAACATGGTTCAGAAGACTGTACCTGGAACTCGCGTCACTGTAGTGGGCA

Basic information

species Physcomitrella patens
transcript PP1S355_49V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162170826|gb|FC347440.1|FC347440
EST:     AGAGTAAATATGTTGACCAGCAAACTTTGAAGCTACAGGAGAACCCTGAG                         GATGTTCCTACAGGAGAGCTACCTAGAAATTTGCTGCTAGCAGTTGATCGT
genomic: AGAGTAAATATGTTGACCAGCAAACTTTGAAGCTACAGGAGAACCCTGAGgtgattgtcg ... atatcggcagGATGTTCCTACAGGAGAGCTACCTAGAAATTTGCTGCTAGCAGTTGATCGT
EST: gi|162162198|gb|FC337980.1|FC337980
EST:     AGAGTAAATATGTTGACCAGCAAACTTTGAAGCTACAGGAGAACCCTGAG                         GATGTTCCTACAGGAGAGCTACCTAGAAATTTGCTGCTAGCAGTTGATCGT
genomic: AGAGTAAATATGTTGACCAGCAAACTTTGAAGCTACAGGAGAACCCTGAGgtgattgtcg ... atatcggcagGATGTTCCTACAGGAGAGCTACCTAGAAATTTGCTGCTAGCAGTTGATCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccgttctattccatttctatctcaagcattatggttgttggaaatatcggcagGATGTTCCTACAGGAGAGCTACCTAGAAATTTGCTGCTAGCAGTTGATCGTAACATGGTTCAGAAGACTGTACCTGGAACTCGCGTCACTGTAGTGGGCA
              atttctat  TA-rich tract