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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtctctaggactttgaccggactcggtccctataatctgtctatagtcttctccttcacatccaggttggttctcaacatatacatcctgtctgatgctgtagttagcattgtgcgtttggtctctctttgttttgttcgtgtacagttgagaattctgtatctatactctttgcagGAGGACTTTAGGCCCATATTAAGAGAGCTGCTATTGACGCATCGCGGTCTAGAGTTCCTACATGATTCCCCGGAGTTTCAAGACAGATATG

Basic information

species Physcomitrella patens
transcript PP1S34_411V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162194704|gb|FC371551.1|FC371551
EST:     CTCGCATTTTTACTTTGTTGAAGCAACCAGACAAGAATTTCCTTAGACAG                         GAGGACTTTAGGCCCATATTAAGAGAGCTGCTATTGACGCATCGCGGTCTA
genomic: CTCGCATTTTTACTTTGTTGAAGCAACCAGACAAGAATTTCCTTAGACAGgttcgtctct ... ctctttgcagGAGGACTTTAGGCCCATATTAAGAGAGCTGCTATTGACGCATCGCGGTCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctttgttttgttcgtgtacagttgagaattctgtatctatactctttgcagGAGGACTTTAGGCCCATATTAAGAGAGCTGCTATTGACGCATCGCGGTCTAGAGTTCCTACATGATTCCCCGGAGTTTCAAGACAGATATG
                                           tactcttt  CT-rich tract
     tttgtttt  TA-rich tract