1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cgtcatatgttctatgcaaagctgttgcttgaaaaaatccatcaagaccttcaatgttttcatgcttgacattcaatgctttctgcgttcatttctgcagGTTCATTATTGTCAGGAAGTATGGCGAGTTCTATAACAGTTTCTTACATATCTAACGTCGAAAACTACACCGGCACTGCCAAGACCTTTAGTATATCAGA
species | Physcomitrella patens |
transcript | PP1S343_14V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCTTCCGATGTTGGCCCTTTTCATGCATATTTCAATCCTAAAATTGAAG GTTCATTATTGTCAGGAAGTATGGCGAGTTCTATAACAGTTTCTTACATAT
genomic: ACCTTCCGATGTTGGCCCTTTTCATGCATATTTCAATCCTAAAATTGAAGgtgtgcaatt ... atttctgcagGTTCATTATTGTCAGGAAGTATGGCGAGTTCTATAACAGTTTCTTACATAT
gaccttcaatgttttcatgcttgacattcaatgctttctgcgttcatttctgcagGTTCATTATTGTCAGGAAGTATGGCGAGTTCTATAACAGTTTCTTACATATCTAACGTCGAAAACTACACCGGCACTGCCAAGACCTTTAGTATATCAGA
gcttgac putative branch site (score: 1)
ttcatttct putative PPT
aatgtttt TA-rich tract