Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcggaggggggtgaggttgggattgcgtgttgtgggtgaggggcgggaatgcgtagtaggggcgagggagtgtaggcgcgaggggagtgggcatgtgcatgtgcgtgcatgttggtgggggcgcgatgtgaacagtggagtggtaatgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGTGCCCGGCGGCGACCTTGCGAAGGTGCAGCGGGCGGTGTGCATGATCAGC

Basic information

species Physcomitrella patens
transcript PP1S341_23V6.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S341_23V6.2 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os03g11970.1 (Oryza sativa), 3'ss of exon 4
gtaagcggaggggggtgaggttgggattgcgtgttgtgggtgaggggcgggaatgcgtagtaggggcgagggagtgtaggcgcgaggggagtgggcatgtgcatgtgcgtgcatgttggtgggggcg-cgatgtgaacagtggagtggtaatgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGTGCCCGGCGGCGACCTTGCGAAGGTGCAGCGGGCGGTGTGCATGATCAGC
                                                               |  ||    | |  |    |  |  || |      |    |   ||   ||| ||  |  |  |  || |   || |||   | ||  | |    ||||||||||| || ||||||||||| || ||||||||||| || |||| |||||| || || ||||| |||||||||  | ||||||||||||||||||||
---------------------------------------------------------------gtacgtta-actccatcatctcgctgaattccagagattttagccggagatgatgacgatgatgatgacgaagacggtgatcttgtgtttc----agGTGTCCGACAGGGTTCAAGTGCGGGATAAACTACCAGCCGCCGACGGCGGTGCCGGGAGGGGACCTGGCGAAGGTGAGGAGGGCGGTGTGCATGATCAGC

upper sequence: PP1S341_23V6.2 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G051782_T01 (Zea mays), 3'ss of exon 4
gtaagcggaggggggtgaggttgggattgcgtgttgtgggtgaggggcgggaatgcgtagtaggggcgagggagtgtaggcgcgaggggagtgggcatgtgcatgtgcgtgcatgttggtgggggcgcgatgtgaacagtggagtggtaatgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGTGCCCGGCGGCGACCTTGCGAAGGTGCAGCGGGCGGTGTGCATGATCAGC
                                              |        |  |       | | |   | |  |      |   ||   | |   | ||       | | ||   | | |  ||  ||         |  ||     |  |||||| || || ||||||||||| || || |||||||| |||||||| || || || || || ||||| || |||||||| || || || ||||||||||||
----------------------------------------------gtatatgctcacaactcttaccaagttatatcagattatagattgtaatcttccac-tgaaaagata-gctgcgcgagacatga-atgtctttctctgctgtctcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTCCCTGGAGGGGACCTGGCCAAGGTGCAACGAGCAGTCTGCATGATCAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162155550|gb|FC331514.1|FC331514
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162232793|gb|FC407472.1|FC407472
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|100401155|gb|BY990858.1|BY990858
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|208378435|gb|DC923071.1|DC923071
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162213587|gb|FC389459.1|FC389459
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162186500|gb|FC363264.1|FC363264
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|37834590|gb|BJ592602.1|BJ592602
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162171364|gb|FC347263.1|FC347263
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162179971|gb|FC356042.1|FC356042
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162169581|gb|FC346145.1|FC346145
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162167932|gb|FC344870.1|FC344870
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162195646|gb|FC370309.1|FC370309
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162197747|gb|FC374997.1|FC374997
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|37852461|gb|BJ610469.1|BJ610469
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162162527|gb|FC338621.1|FC338621
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162215756|gb|FC390821.1|FC390821
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162170585|gb|FC347081.1|FC347081
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162162282|gb|FC338064.1|FC338064
EST:     TGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: TGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|67726559|gb|BJ976818.1|BJ976818
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|67725028|gb|BJ975287.1|BJ975287
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|208364883|gb|DC957906.1|DC957906
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162165779|gb|FC341740.1|FC341740
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|37838354|gb|BJ596362.1|BJ596362
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|208398501|gb|DC912374.1|DC912374
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTAGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162229380|gb|FC405571.1|FC405571
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|208353182|gb|DC926149.1|DC926149
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTAGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|208367069|gb|DC947803.1|DC947803
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162219948|gb|FC396763.1|FC396763
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162264420|gb|FC440586.1|FC440586
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162155722|gb|FC331335.1|FC331335
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|18341561|gb|BJ173596.1|BJ173596
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|208372464|gb|DC948718.1|DC948718
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162171365|gb|FC347264.1|FC347264
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|208374819|gb|DC952524.1|DC952524
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162219666|gb|FC395662.1|FC395662
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162215755|gb|FC390820.1|FC390820
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|67696716|gb|BJ956949.1|BJ956949
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|18338783|gb|BJ170808.1|BJ170808
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162155721|gb|FC331334.1|FC331334
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162264419|gb|FC440585.1|FC440585
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|67693115|gb|BJ953348.1|BJ953348
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162156103|gb|FC332270.1|FC332270
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162268528|gb|FC444401.1|FC444401
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162229156|gb|FC404515.1|FC404515
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162199257|gb|FC375093.1|FC375093
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|18340151|gb|BJ172179.1|BJ172179
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|208361925|gb|DC953975.1|DC953975
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162153182|gb|FC329588.1|FC329588
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|208359079|gb|DC957827.1|DC957827
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162170568|gb|FC347688.1|FC347688
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162174342|gb|FC350413.1|FC350413
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162155549|gb|FC331513.1|FC331513
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162189299|gb|FC366769.1|FC366769
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162165780|gb|FC341741.1|FC341741
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162179972|gb|FC356043.1|FC356043
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|208389333|gb|DC953171.1|DC953171
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162187182|gb|FC363692.1|FC363692
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|37833822|gb|BJ591834.1|BJ591834
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|208373771|gb|DC936570.1|DC936570
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162199258|gb|FC375094.1|FC375094
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162229379|gb|FC405570.1|FC405570
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|37837973|gb|BJ595981.1|BJ595981
EST:     ACCATCAAGANGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: ACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162189300|gb|FC366770.1|FC366770
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|18332918|gb|BJ164931.1|BJ164931
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|37835275|gb|BJ593287.1|BJ593287
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|67724075|gb|BJ974334.1|BJ974334
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|162219949|gb|FC396764.1|FC396764
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
EST: gi|208364029|gb|DC950377.1|DC950377
EST:     GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTG                         GTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT
genomic: GCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 34 (downstream exon)
Score: 70

TGGCGTGTTGCCTGATGTACAGAGGGGATGTGGTGCCGAAGGACGTGAACGCCGCGGTGGCGACCATCAAGACGAAGCGCACGGTGCAGTTTGTGGACTGgtaagcggag ... atgcgtgcagGTGTCCGACGGGTTTCAAGTGCGGAATCAACTACCAGCCACCAACGGTGGTGCCCGGCGGCGACCTTGCGAAGGTGCAGCGGGCGGTGTGCATGATCAGC




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