1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgcaaattgttacattcgtggttttgctgtccatgatacgtgtatttaatcaaccatgcgcttacatgagatgcttaagattcatgttcgcaagaacagGACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATTGGGCTCAATGAGGATAATCTGCTTCGTTTAATACGCATGGTGAAGAAAT
species | Physcomitrella patens |
transcript | PP1S33_245V6.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGAGCACGTCCTTCGCACCGGGCCGGGAAGTTTCAAACAGTATGTGAAA GACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATTEST: gi|162236809|gb|FC413488.1|FC413488
genomic: CAGAGCACGTCCTTCGCACCGGGCCGGGAAGTTTCAAACAGTATGTGAAAgtacgctctt ... gcaagaacagGACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATT
EST: GTTTCAAACAGTATGTGAAA GACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATTEST: gi|208396907|gb|DC920447.1|DC920447
genomic: GTTTCAAACAGTATGTGAAAgtacgctctt ... gcaagaacagGACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATT
EST: AAACAGTATGTGAAA GACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATTEST: gi|208381571|gb|DC923157.1|DC923157
genomic: AAACAGTATGTGAAAgtacgctctt ... gcaagaacagGACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATT
EST: CAGAGCACGTCCTTCGCACCGGGCCGGGAAGTTTCAAACAGTATGTGAAA GACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATTEST: gi|208346127|gb|DC917080.1|DC917080
genomic: CAGAGCACGTCCTTCGCACCGGGCCGGGAAGTTTCAAACAGTATGTGAAAgtacgctctt ... gcaagaacagGACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATT
EST: CAGAGCACGTCCTTCGCACCGGGCCGGGAAGTTTCAAACAGTATGTGAAA GACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATTEST: gi|162253723|gb|FC429837.1|FC429837
genomic: CAGAGCACGTCCTTCGCACCGGGCCGGGAAGTTTCAAACAGTATGTGAAAgtacgctctt ... gcaagaacagGACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATT
EST: CAGAGCACGTCCTTCGCACCGGGCCGGGAAGTTTCAAACAGTATGTGAAA GACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATTEST: gi|162220029|gb|FC395375.1|FC395375
genomic: CAGAGCACGTCCTTCGCACCGGGCCGGGAAGTTTCAAACAGTATGTGAAAgtacgctctt ... gcaagaacagGACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATT
EST: CACCGGGCCGGGAAGTTTCAAACAGTATGTGAAA GACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATTEST: gi|208382981|gb|DC927731.1|DC927731
genomic: CACCGGGCCGGGAAGTTTCAAACAGTATGTGAAAgtacgctctt ... gcaagaacagGACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATT
EST: CAGAGCACGTCCTTCGCACCGGGCCGGGAAGTTTCAAACAGTATGTGAAA GACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATT
genomic: CAGAGCACGTCCTTCGCACCGGGCCGGGAAGTTTCAAACAGTATGTGAAAgtacgctctt ... gcaagaacagGACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATT
tttaatcaaccatgcgcttacatgagatgcttaagattcatgttcgcaagaacagGACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATTGGGCTCAATGAGGATAATCTGCTTCGTTTAATACGCATGGTGAAGAAAT
cgcttac putative branch site (score: 34)
ttaagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcaaattgttacattcgtggttttgctgtccatgatacgtgtatttaatcaaccatgcgcttacatgagatgcttaagattcatgttcgcaagaacagGACTGCAAGGATCTTGGATTTGATACGGTTGAGATAAATGCCGACTTCATTGGGCTCAATGAGGATAATCTGCTTCGTTTAATACGCATGGTGAAGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA