1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaacgcatgtgtctagaaagtgcaatctgctactataaggaaagttgtggagctttttacgcgaagtggttattcatccactcactgatcacttgtgcagTTGGAGATGATCTTGCAAGCTGTGGAATACGAAAAAG
species | Physcomitrella patens |
transcript | PP1S33_22V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGAGAATAACAGCACTCCTGAAGCCAAATTTGTTAAAGACTTGGACAAG TTGGAGATGATCTTGCAAGCTGTGGAATACGAAAAAGEST: gi|208395117|gb|DC923916.1|DC923916
genomic: ACGAGAATAACAGCACTCCTGAAGCCAAATTTGTTAAAGACTTGGACAAGgtgtgtttaa ... acttgtgcagTTGGAGATGATCTTGCAAGCTGTGGAATACGAAAAAG
EST: ACGAGAATAACAGCACTCCTGAAGCCAAATTTGTTAAAGACTTGGACAAG TTGGAGATGATCTTGCAAGCTGTGGAATACGAAAAAGEST: gi|37851610|gb|BJ609618.1|BJ609618
genomic: ACGAGAATAACAGCACTCCTGAAGCCAAATTTGTTAAAGACTTGGACAAGgtgtgtttaa ... acttgtgcagTTGGAGATGATCTTGCAAGCTGTGGAATACGAAAAAG
EST: ACGAGAATAACAGCACTCCTGAAGCCAAATTTGTTAAAGACTTGGACAAG TTGGAGATGATCTTGCAAGCTGTGGAATACGAAAAAGEST: gi|208368094|gb|DC947654.1|DC947654
genomic: ACGAGAATAACAGCACTCCTGAAGCCAAATTTGTTAAAGACTTGGACAAGgtgtgtttaa ... acttgtgcagTTGGAGATGATCTTGCAAGCTGTGGAATACGAAAAAG
EST: ACGAAAATAACAGCACTCCTGAAGCCAAATTTGTTAAAGACTTGGACAAG TTGGAGATGATCTTGCAAGCTGTGGAATACGAAAAAGEST: gi|162236137|gb|FC411126.1|FC411126
genomic: ACGAGAATAACAGCACTCCTGAAGCCAAATTTGTTAAAGACTTGGACAAGgtgtgtttaa ... acttgtgcagTTGGAGATGATCTTGCAAGCTGTGGAATACGAAAAAG
EST: AACAGCACTCCTGAAGCCAAATTTGTTAAAGACTTGGACAAG TTGGAGATGATCTTACAAGCTGTGGAATACGAAAAAG
genomic: AACAGCACTCCTGAAGCCAAATTTGTTAAAGACTTGGACAAGgtgtgtttaa ... acttgtgcagTTGGAGATGATCTTGCAAGCTGTGGAATACGAAAAAG
tgtggagctttttacgcgaagtggttattcatccactcactgatcacttgtgcagTTGGAGATGATCTTGCAAGCTGTGGAATACGAAAAAG
ttattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacgcatgtgtctagaaagtgcaatctgctactataaggaaagttgtggagctttttacgcgaagtggttattcatccactcactgatcacttgtgcagTTGGAGATGATCTTGCAAGCTGTGGAATACGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG