1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atctcctatcttgggtgcattattgctatgaagtccttgtagttgcttaagatgggtttcagaaaattgtctcttatacgaagttgacttccacgtccagGGTATCTCTGCCGTGGAGGCATTCTATGAGTTGTTGCGACAGCCTTCCTTAAGCGTGATGCATCCTGAGCTTGGCAAGCCAGTCCGACCTGTTGAGCTAT
species | Physcomitrella patens |
transcript | PP1S323_18V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATTACCATTGAAACGGGTGATACCTTCAGCGGGAAGGGTACGATTCAG GGTATCTCTGCCGTGGAGGCATTCTATGAGTTGTTGCGACAGCCTTCCTTAEST: gi|208395137|gb|DC923936.1|DC923936
genomic: AAATTACCATTGAAACGGGTGATACCTTCAGCGGGAAGGGTACGATTCAGgttagctgga ... ccacgtccagGGTATCTCTGCCGTGGAGGCATTCTATGAGTTGTTGCGACAGCCTTCCTTA
EST: AAATTACCATTGAAACGGGTGATACCTTCAGCGGGAAGGGTACGATTCAG GGTATCTCTGCCGTGGAGGCATTCTATGAGTTGTTGCGACAGCCTTCCTTA
genomic: AAATTACCATTGAAACGGGTGATACCTTCAGCGGGAAGGGTACGATTCAGgttagctgga ... ccacgtccagGGTATCTCTGCCGTGGAGGCATTCTATGAGTTGTTGCGACAGCCTTCCTTA
cttaagatgggtttcagaaaattgtctcttatacgaagttgacttccacgtccagGGTATCTCTGCCGTGGAGGCATTCTATGAGTTGTTGCGACAGCCTTCCTTAAGCGTGATGCATCCTGAGCTTGGCAAGCCAGTCCGACCTGTTGAGCTAT
agttgac putative branch site (score: 4)
cttccac CT-rich tract
agaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctcctatcttgggtgcattattgctatgaagtccttgtagttgcttaagatgggtttcagaaaattgtctcttatacgaagttgacttccacgtccagGGTATCTCTGCCGTGGAGGCATTCTATGAGTTGTTGCGACAGCCTTCCTTAAGCGTGATGCATCCTGAGCTTGGCAAGCCAGTCCGACCTGTTGAGCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT