1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tctccatgcatcgcttgattctatttatagtcgtttttgtttttaatcactcattatcactcactgtatgcgttcttaagtttgcagtggttgtttgcagGTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGCGGCAGCTGTGAAGGCTGACGAGGAAGAAATTTACCCAACAGTCCTTGATCACACAAT
species | Physcomitrella patens |
transcript | PP1S31_68V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAG GTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGCGGCAGCTGEST: gi|208379508|gb|DC911119.1|DC911119
genomic: TAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAGgtacttgatg ... ttgtttgcagGTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGCGGCAGCTG
EST: TAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCNAG GTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGCEST: gi|162182459|gb|FC358058.1|FC358058
genomic: TAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAGgtacttgatg ... ttgtttgcagGTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGC
EST: TAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAG GTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGCGGCAGCTGEST: gi|67573598|gb|BJ946422.1|BJ946422
genomic: TAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAGgtacttgatg ... ttgtttgcagGTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGCGGCAGCTG
EST: TAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAG GTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGCGGCAGCTGEST: gi|208377120|gb|DC940820.1|DC940820
genomic: TAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAGgtacttgatg ... ttgtttgcagGTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGCGGCAGCTG
EST: TAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAG GTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGCGGCAGCTG
genomic: TAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAGgtacttgatg ... ttgtttgcagGTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGCGGCAGCTG
atcactcattatcactcactgtatgcgttcttaagtttgcagtggttgtttgcagGTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGCGGCAGCTGTGAAGGCTGACGAGGAAGAAATTTACCCAACAGTCCTTGATCACACAAT
cactcac putative branch site (score: 4)
ttaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctccatgcatcgcttgattctatttatagtcgtttttgtttttaatcactcattatcactcactgtatgcgttcttaagtttgcagtggttgtttgcagGTCTACTGCCACCAGGTACACAATTTGATCTTTTCAAAGGTGCGGCAGCTGTGAAGGCTGACGAGGAAGAAATTTACCCAACAGTCCTTGATCACACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA