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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctaggtggtgtttttctgttacatttgctccccatggtaattttaagcaatcatatccaatatcaggtttaagaactcattaaaacttgaattttattgtccttgctggaggaacagGTCTATCTCAGTTTCACCCAAGCAACTCGTTTGGTTATCTACTCGACGTCCTCGACGGTGGGGAACAGGGTGACGACATTGAACCCACTCCTGAATTTTA

Basic information

species Physcomitrella patens
transcript PP1S31_251V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162209786|gb|FC385720.1|FC385720
EST:     CCTTGCCAATGCGGGATTTTTCACAGATGATTTANGGCTGTCTGATGAAG                         GTCTATCTCAGTTTCAC
genomic: CCTTGCCAATGCGGGATTTTTCACAGATGATTTAGGGCTGTCTGATGAAGgtatctaggt ... ggaggaacagGTCTATCTCAGTTTCAC
EST: gi|162242461|gb|FC418960.1|FC418960
EST:     CCTTGCCAATGCGGGATTTTTCACAGATGATTTAGGGCTGTCTGATGAAG                         GTCTATCTCAGTTTCACCCAAGCAACTCGTTTGGTTATCTACTCGACGTCC
genomic: CCTTGCCAATGCGGGATTTTTCACAGATGATTTAGGGCTGTCTGATGAAGgtatctaggt ... ggaggaacagGTCTATCTCAGTTTCACCCAAGCAACTCGTTTGGTTATCTACTCGACGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaggtttaagaactcattaaaacttgaattttattgtccttgctggaggaacagGTCTATCTCAGTTTCACCCAAGCAACTCGTTTGGTTATCTACTCGACGTCCTCGACGGTGGGGAACAGGGTGACGACATTGAACCCACTCCTGAATTTTA
              tcattaaaacttgaat  TA-rich tract