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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaacatcttccttgctaatcagactctcttgaagtcttgctgcacaaaaatgttttctgagccttccttcaccttacatcacgaggactgattcgactaatgttactattgcagCTCTTGGGACCATTTTCTCTGCAACGGACTCAGTTTGCGTCCTGCAA

Basic information

species Physcomitrella patens
transcript PP1S31_203V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162178529|gb|FC354981.1|FC354981
EST:     CATGTTTCCGAAGTTAGGACTGGAGAAACTGGTGATCGGCGATTACCTTG                         CTCTTGGGACCATTTTCTCTGCAACGGACTCAGTTTGCGTCCTGCAA
genomic: CATGTTTCCGAAGTTAGGACTGGAGAAACTGGTGATCGGCGATTACCTTGgtatgaacat ... actattgcagCTCTTGGGACCATTTTCTCTGCAACGGACTCAGTTTGCGTCCTGCAA
EST: gi|162257367|gb|FC433450.1|FC433450
EST:     CATGTTTCCGAAGTTAGGACTGGAGAAACTGGTGATCGGCGATTACCTTG                         CTCTTGGGACCATTTTCTCTGCAACGGACTCAGTTTGCGTCCTGCAA
genomic: CATGTTTCCGAAGTTAGGACTGGAGAAACTGGTGATCGGCGATTACCTTGgtatgaacat ... actattgcagCTCTTGGGACCATTTTCTCTGCAACGGACTCAGTTTGCGTCCTGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccttccttcaccttacatcacgaggactgattcgactaatgttactattgcagCTCTTGGGACCATTTTCTCTGCAACGGACTCAGTTTGCGTCCTGCAA
                                   gactaat  putative branch site (score: 2)
                                      taatgtta  TA-rich tract