Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttctttacgttttgactcatacaatctttggcgagttaccacgaagcttggttgtttatttaagtttagcagataactgaatttgatgttctcaatgttctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCCGTGACATCATCATGCGTGAGTTCCGTTCAGGGTCATCCCGAGTGCTCAT

Basic information

species Physcomitrella patens
transcript PP1S31_150V6.5
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37829437|gb|BJ587449.1|BJ587449
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|18338030|gb|BJ170054.1|BJ170054
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|18335795|gb|BJ167816.1|BJ167816
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208396705|gb|DC920385.1|DC920385
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208369490|gb|DC955903.1|DC955903
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|67692395|gb|BJ952628.1|BJ952628
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208382719|gb|DC928480.1|DC928480
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|18341408|gb|BJ173443.1|BJ173443
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208359057|gb|DC957805.1|DC957805
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGACTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162259491|gb|FC435002.1|FC435002
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208353479|gb|DC918493.1|DC918493
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|18340945|gb|BJ172977.1|BJ172977
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|67726661|gb|BJ976920.1|BJ976920
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|37850400|gb|BJ608408.1|BJ608408
EST:     TTCATTAACACCCGCCGAAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTCATTAACACCCGCCG-AAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACA-CC
EST: gi|208375247|gb|DC948772.1|DC948772
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162160002|gb|FC335664.1|FC335664
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTTTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|67726546|gb|BJ976805.1|BJ976805
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208371920|gb|DC948323.1|DC948323
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208348727|gb|DC926402.1|DC926402
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208351468|gb|DC921773.1|DC921773
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162224597|gb|FC400493.1|FC400493
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|37846555|gb|BJ604563.1|BJ604563
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACA-CC
EST: gi|208353656|gb|DC922130.1|DC922130
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162221099|gb|FC397740.1|FC397740
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTTTTTGCAACACAGGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|67728312|gb|BJ978571.1|BJ978571
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|37828816|gb|BJ586828.1|BJ586828
EST:     GGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: GGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACA-CC
EST: gi|37839918|gb|BJ597926.1|BJ597926
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208381300|gb|DC919190.1|DC919190
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|18340420|gb|BJ172448.1|BJ172448
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGC-TACCGATAANATGCGAG                         CTCNCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162150495|gb|FC326143.1|FC326143
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|67579187|gb|BJ951332.1|BJ951332
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|37835159|gb|BJ593171.1|BJ593171
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACA-CC
EST: gi|162160003|gb|FC335665.1|FC335665
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162259490|gb|FC435001.1|FC435001
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162240934|gb|FC415213.1|FC415213
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|67725433|gb|BJ975692.1|BJ975692
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAGCACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208364434|gb|DC954509.1|DC954509
EST:     TTCCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|37850122|gb|BJ608130.1|BJ608130
EST:     TTCATTAACACCCGCCGAAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTTCTGCAACACACGGAGATATGGACCAAAACACC
genomic: TTCATTAACACCCGCCG-AAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTC-TCTGCAACACACGGAGATATGGACCAAAACA-C
EST: gi|37842412|gb|BJ600420.1|BJ600420
EST:     TTCATTAACACCCGCCGAAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTTCTGCAACACACGGAGATATGGACCAAAACACC
genomic: TTCATTAACACCCGCCG-AAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTC-TCTGCAACACACGGAGATATGGACCAAAACA-C
EST: gi|37839917|gb|BJ597925.1|BJ597925
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|18338651|gb|BJ170675.1|BJ170675
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208371715|gb|DC951777.1|DC951777
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|67725947|gb|BJ976206.1|BJ976206
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162220742|gb|FC395511.1|FC395511
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162260318|gb|FC435621.1|FC435621
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208378518|gb|DC927215.1|DC927215
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162224598|gb|FC400494.1|FC400494
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162198131|gb|FC373081.1|FC373081
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|37834157|gb|BJ592169.1|BJ592169
EST:     GGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTTCTGCAACACACGGAGATATGGACCAAAACACC
genomic: GGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTC-TCTGCAACACACGGAGATATGGACCAAAACA-C
EST: gi|37840935|gb|BJ598943.1|BJ598943
EST:     TTCATTAACACCCGCCGAAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTCATTAACACCCGCCG-AAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACA-CC
EST: gi|67726933|gb|BJ977192.1|BJ977192
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|18334536|gb|BJ166553.1|BJ166553
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|18339620|gb|BJ171647.1|BJ171647
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208353483|gb|DC918497.1|DC918497
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTNTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|37843827|gb|BJ601835.1|BJ601835
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACA-CC
EST: gi|208364772|gb|DC954488.1|DC954488
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208372686|gb|DC952573.1|DC952573
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208371827|gb|DC951833.1|DC951833
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208392199|gb|DC957278.1|DC957278
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162220741|gb|FC395510.1|FC395510
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|67727624|gb|BJ977883.1|BJ977883
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162272353|gb|FC449018.1|FC449018
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|67726662|gb|BJ976921.1|BJ976921
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|208356832|gb|DC926843.1|DC926843
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162272354|gb|FC449019.1|FC449019
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|162218219|gb|FC395017.1|FC395017
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|18333878|gb|BJ165894.1|BJ165894
EST:     TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
genomic: TTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCC
EST: gi|37827548|gb|BJ585560.1|BJ585560
EST:     TTCATTAACACCCGCCGAAAAGGTCGACTGGCTTACCGATAAGATGCGAG                         CTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCGAAACACCC
genomic: TTCATTAACACCCGCCG-AAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACA-CC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 11 (upstream exon), 25 (downstream exon)
Score: 1

GACACACTATGTGATCTTTATGAAACCCTGGCCATTACGCAGAGTGTTATTTTCATTAACACCCGCCGAAAGGTCGACTGGCTTACCGATAAGATGCGAGgtacttcttt ... ctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCCGTGACATCATCATGCGTGAGTTCCGTTCAGGGTCATCCCGAGTGCTCAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttaagtttagcagataactgaatttgatgttctcaatgttctgtgaccagCTCGCGACCACACCGTCTCTGCAACACACGGAGATATGGACCAAAACACCCGTGACATCATCATGCGTGAGTTCCGTTCAGGGTCATCCCGAGTGCTCAT
     ttaagttta  TA-rich tract