1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgtgacgctattttaacaagttgctttggtcggcgtaaatgatggtgatcttcgatctcgacaattcagttccccttcaccgtcgtgtcaaagtggattcgtgagactgtgaattgatacgtaaatctgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTGAATGCTGTAGACGACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGG
species | Physcomitrella patens |
transcript | PP1S309_73V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATG GCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTGEST: gi|208362133|gb|DC943532.1|DC943532
genomic: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacg ... tgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
EST: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATG GCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTGEST: gi|162156177|gb|FC332552.1|FC332552
genomic: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacg ... tgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
EST: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATG GCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTGEST: gi|18328635|gb|BJ160640.1|BJ160640
genomic: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacg ... tgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
EST: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATG GCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTGEST: gi|162268832|gb|FC445680.1|FC445680
genomic: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacg ... tgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
EST: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATG GCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTGEST: gi|18330269|gb|BJ162275.1|BJ162275
genomic: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacg ... tgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
EST: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATG GCGTACATGTTGAAGTACGATTCTACTCACGGG
genomic: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacg ... tgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGG
tcgtgtcaaagtggattcgtgagactgtgaattgatacgtaaatctgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTGAATGCTGTAGACGACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGG
aattgat putative branch site (score: 4)
aattgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgacgctattttaacaagttgctttggtcggcgtaaatgatggtgatcttcgatctcgacaattcagttccccttcaccgtcgtgtcaaagtggattcgtgagactgtgaattgatacgtaaatctgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTGAATGCTGTAGACGACAATACTTTGCAAGTTGGCTCTCAAACCATCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG