1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgtagtgtcttgaataacttttccacgagttatttgctctgactgagtgttgtactggttataatttttgtataagatacgttgtttgttcgtcgcatgtaaatgaatgtcgatcactatgattcttattctactggggatatttgatttggttggtgcagGATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTCGTGATAACAAAGATGATTTAG
species | Physcomitrella patens |
transcript | PP1S307_63V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCGGAGAAGCTGGTTGCTCTGAAGATTCACCCAATGACTATTATCGCTG GATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTCEST: gi|67570647|gb|BJ943471.1|BJ943471
genomic: GGCGGAGAAGCTGGTTGCTCTGAAGATTCACCCAATGACTATTATCGCTGgtttgtagtg ... gttggtgcagGATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTC
EST: GGCGGAGAAGCTGGTTGCTCTGAAGATTCACCCAATGACTATTATCGCTG GATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTCEST: gi|100409456|gb|BY992020.1|BY992020
genomic: GGCGGAGAAGCTGGTTGCTCTGAAGATTCACCCAATGACTATTATCGCTGgtttgtagtg ... gttggtgcagGATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTC
EST: GGCGGAGAAGCTGGTTGCTCTGAAGATTCACCCAATGACTATAATCGCTG GATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTCEST: gi|208397125|gb|DC908139.1|DC908139
genomic: GGCGGAGAAGCTGGTTGCTCTGAAGATTCACCCAATGACTATTATCGCTGgtttgtagtg ... gttggtgcagGATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTC
EST: GGCGGAGAAGCTGGTTGCTCTGAAGATTCACCCAATGACTATTATCGCTG GTTTGATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTEST: gi|162185509|gb|FC361233.1|FC361233
genomic: GGCGGAGAAGCTGGTTGCTCTGAAGATTCACCCAATGACTATTATCGCTGgtttgtagtg ... gttggtgcagG----ATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCT
EST: GGCGGAGAAGCTGGTTGCTCTGAAGATTCACCCAATGACTATTATCGCTG GATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTCEST: gi|100413175|gb|BY992624.1|BY992624
genomic: GGCGGAGAAGCTGGTTGCTCTGAAGATTCACCCAATGACTATTATCGCTGgtttgtagtg ... gttggtgcagGATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTC
EST: GGCGGAGAAGCTGGTTGCTCTGAAGATTCACCCAATGACTATTATCGCTG GATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTC
genomic: GGCGGAGAAGCTGGTTGCTCTGAAGATTCACCCAATGACTATTATCGCTGgtttgtagtg ... gttggtgcagGATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTC
atgtcgatcactatgattcttattctactggggatatttgatttggttggtgcagGATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTCGTGATAACAAAGATGATTTAG
atttgat putative branch site (score: 7)
atatttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtagtgtcttgaataacttttccacgagttatttgctctgactgagtgttgtactggttataatttttgtataagatacgttgtttgttcgtcgcatgtaaatgaatgtcgatcactatgattcttattctactggggatatttgatttggttggtgcagGATATCGCATGGCTGCTGAGGCTGCTCGTAGTGCATTAGAAGCTGCTGTTCGTGATAACAAAGATGATTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG