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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccgaaaatccttgtttgaaggattgcgttctgctgcctgatgttcgctttctgaatgatatttctgccacgatagctgaccgtatgctgattttcattagGAAAATGGCTACGAAGTGATGTTTTTGAGCGCACGGGCAATCTCTCAGGCATATTTGACGCGCCAGTTTCTAGTTAACTTAAAGCAG

Basic information

species Physcomitrella patens
transcript PP1S2_272V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162190415|gb|FC365637.1|FC365637
EST:     GGAGGGATTGGACGCAATCAGGAGTTACCCGCCTTTTTTCTGCTATTAAG                         GAAAATGGCTACGAAGTGATGTTTTTGAGCGCACGGGCAATCTCTCAGGCA
genomic: GGAGGGATTGGACGCAATCAGGAGTTACCCGCCTTTTTTCTGCTATTAAGgtgctctcct ... ttttcattagGAAAATGGCTACGAAGTGATGTTTTTGAGCGCACGGGCAATCTCTCAGGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttctgaatgatatttctgccacgatagctgaccgtatgctgattttcattagGAAAATGGCTACGAAGTGATGTTTTTGAGCGCACGGGCAATCTCTCAGGCATATTTGACGCGCCAGTTTCTAGTTAACTTAAAGCAG
                                       tgctgat  putative branch site (score: 3)
                                             ttttcatt  CT-rich tract
        aatgatattt  TA-rich tract