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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctttcttgaaaattcttgctaagtagttgttcagatgaagcttagatccgagcccttgatttgttcttcctgttacagtattatctttttctaatgttttacatattttgaggctcagatgtttctgtgtttgcagGGGTAACCTGATGGAGTTGCGTTCTCAACATAAGGACACGTTTCTGGAAAAGCATGGTGTGAAACTAGGATTTATGTCTGGGTTTGTGAAG

Basic information

species Physcomitrella patens
transcript PP1S2_220V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S2_220V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv19s0090g00750.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtttctttcttgaaaattcttgctaagtagttgttcagatgaagcttagatccgagcccttgatttgttcttcctgttacagtattatctttttctaatg--ttttacatattttgaggctcagatgtttctgtgtttgcagGGGTAACCTGATGGAGTTGCGTTCTCAACATAAGGACACGTTTCTGGAAAAGCATGGTGTGAAACTAGGATTTATGTCTGGGTTTGTGAAG
                                          || ||   || ||   |    |||  |    | |  |   |   ||| |     ||||  ||  ||||   | ||||  |       || | ||    |||||||   ||  ||||| || | |||||| |  |||| ||  | ||| | |||||||||||||||||  || |||||||||| |||||||| |||
----------------------------------------tcatcaa-tatatattgaaa---ttgcctgacgcattttagcatgctatcaggcacttctggtgatttttgtctgttttttgctgtgcttgctgctta--ttgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGCATTTTTTGAAAAGCATGGTGTGAAGTTAAGATTTATGTCAGGGTTTGTTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctttttctaatgttttacatattttgaggctcagatgtttctgtgtttgcagGGGTAACCTGATGGAGTTGCGTTCTCAACATAAGGACACGTTTCTGGAAAAGCATGGTGTGAAACTAGGATTTATGTCTGGGTTTGTGAAG
       ttctaat  putative branch site (score: 2)
                                        tttctgt  putative PPT
     ttttctaatgttttac  TA-rich tract