Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC

Basic information

species Physcomitrella patens
transcript PP1S29_222V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttg-gctctactgagcctgaatt---gaagctattcctt-cttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                                                                       |   | ||| | |   |   |||   | | | |  | |   | |  | ||| | |    |||   |   |    ||||||  | |||  || ||||| ||| ||||||| ||||||||||| ||||| || |||||||| || ||||| |||||||| ||||||||  | || ||| | |||||||||||    |
----------------------------------------------------------------------gtttgtacataaaatccatccgtt---tgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os03g38000.2 (Oryza sativa), 3'ss of exon 3
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                                                         || | ||| ||| |  |  ||||  || ||  ||            |    |||| ||    ||||||| || |  | ||          |||   | |||||||| ||  | || |||||||| |||||||||||||||||||| ||||| |||||    || || |  || || || || ||| | || ||||||||    |
--------------------------------------------------------gtttgtttggttcaactcaagcatcgtagtatttaa-----------aaacctcatgatctttttggctcaac-gcacttgt-------tcattatcttttgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTCGACTGGGACCCCAAGGGCAAGGTTGGCCCGACCACCCCTCTGCCGGATCTTGTAACCATCCATGCTC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactga-gcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                                                                ||||    | | | || | |     |  |  ||| ||  |    | || |     | |    || | |  |   | ||||       | |   | ||||| ||| | ||||||||||| ||||| ||||| ||||||||||| || ||||| ||||| || |  |  ||  | || ||| ||||||| || ||| |||
----------------------------------------------------------------gtttggtgcttggtatcagat---gttatcttattatgcaaacat-ataacaaaatagctgttagtaatactctagttga-------cttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                                      |  || |||   | |   |     |  | ||  |  |||  |     |||  | ||| ||  | || ||| ||  | |    |  ||| ||  |              | |||  || ||||||| ||  ||||||||||||| ||||||||||| |||||||| || || |||||    || || || || || || || ||  |||| |||||||| |  |
------------------------------------gtttgttttgctacaattgcccgttgtaatgtctgt--ttgtctctgggtaagcacttc-attttcgacgttcca--aatgtaatttctcaacaaacatc---------tttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA09G28440.1 (Glycine max), 3'ss of exon 5
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttca--ttattccgttggctctactgagcctgaattgaagctattcctt---cttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                          | |||||  |  |  || | |   ||        ||||| ||   |    ||| ||   |    |  |   |   | |  |||    ||| |   |||    | || |     ||  ||   |  | | |   | |  |||| ||  | ||||||||||| ||||||||||| || |||||||| ||||| ||||| || || |  ||||| || || ||| | || || |||||||  |
-------------------------gtttgttttttttttttttttctacatagccacctgattgattttctttcagcactaggattttcatgttgttggctcattttttttcttaatggattgatgttgctaaatgcaaaaagatttttcttcattgtcctatagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACGATCCACACTC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA16G33230.1 (Glycine max), 3'ss of exon 5
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                          |   | || | ||| |  | ||  ||   | |||  | |   | |   ||    |  | |   | | ||  |  ||    ||| |||    | | |     | |  |    |||      | | |  |||| ||||| ||  | ||||||||||| ||||||||||| || |||||||| ||||| ||||| || || |  ||||| || || ||| | || || |||||||  |
-----------------------gtttgcttctatttctcatattacatgatagtttttctttcgccactaggattttcatgcatt---tggctcatt--ttctatttttatttcaacatggaa---agttggtgctaatcactattttcctgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACAATCCACACTC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA16G33240.1 (Glycine max), 3'ss of exon 5
gtattaacagatttttttgatacccctatgttt-actcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccg--ttggctctactgagcctgaattgaagctattccttctt----gcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                             |||| | |  |  || | || | ||||     ||| |  |   |  | ||| ||   |    |  |   |   | |  ||   |  |   |  |||    | || |     ||||||  |  | |  ||||      |||| ||  | ||||||||||| ||||||||||| || |||||||| ||||| ||||| || || |  ||||| || || ||| | || || |||||||  |
-----------------------------gtttgattttttattcttcatagttaact---gatggaatttcttttagcactaggattttcatgttgttggctcattttctttcttcatggattgatggtgctaaatgctaattgattccttactgtcttatatatagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACGATCCACACCC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 3'ss of exon 5
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactg-agcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                                                                   ||  | ||| ||   |   ||   |||   | | | |  ||    ||    ||  | |||  || | |||||||    | || ||     ||||||| ||| | ||| ||||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| | || ||||| || | |||||| |  |
------------------------------------------------------------------gtcagttctt-cacagtggaaacctgtttcttgaatcacattc---tacctagtgagatcttgtgtaacctgaatctg-gttaatcacatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACAC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: AT2G31610.1 (Arabidopsis thaliana), 3'ss of exon 4
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagtt---ctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                                                                           ||| || || | | |   |   |||  ||| ||  |   | | |     |||| |    |  ||   |||   | || | |  |||||||| |||||||| |||||||| ||||||||||| |||||||| || |  ||||||  |||||| | ||| ||| | || ||||| || | ||| ||    |
------------------------------------------------------------------------gtatgctttctaatgagtctcttatctaccatttag--tgagtaagtataccggctttgtctaatcttg-ttggttcaatccgtatttgcagGGGGTGTTGGGAATCAAGGTGAAGATCATGCTTGACTGGGACCCTACGGGCAAATCAGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCATGCTC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                                                   |  ||  |  | ||| |||    ||   ||  | |   ||| |     ||   | |||||| |||   || | |  |    | |||| ||     |  |      |  |||| ||  | |||||||||||||||||||||||||||||||||||||| ||||| || || ||||  |||||| | || ||| |||| || || ||||  |
--------------------------------------------------gtacatgctataatgtctcctggttttggttgaattgt-tagctgccacatcttgatttcatcattttatttgttgaatcccggctgattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                                                 |||      | |  || |||| | | ||| ||    | |||  ||   |  |  |    |    |     ||  || |  ||    |||| | ||        ||    ||||| || |||||||||||||| ||||||||||| |||||||||||||| ||||| || || || |  || || || || ||| | || ||||||||||  |
-------------------------------------------------aatctcctattgcatggttccttacctgctttgatttcaatgttttagttgtctattacttcccaccttttttacttttttg----tgaacttaa--------ttggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
           |||  || |  | || | ||| |    | | ||        |  |  |  |     || | | ||||  |     | |  |||   ||  |    |   ||| |  |  ||    |  |    ||| ||||      | || ||   ||||| ||  | ||||||||||||||||||||||| || ||||||||||| || || ||||| ||||  || || ||||| ||| | || ||||||||||  |
----------gtttgcttcactcaccca-gttgatctgttcatgctt----ctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtc-ctgatcatgtt----ctggattg----cttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ31038 (Selaginella moellendorffii), 3'ss of exon 5
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                                                                                           || | | || |      |  | |||  | |     | || |||    |||| |     |  | || |||||| || ||||| |||||||| ||||||||||| ||||||||||| || |||||    || ||   ||| || || || ||  |||| || |||||  | |
-------------------------------------------------------------------------------------------gtgcaagaactcgatcgttttgatttggatccagtttctaagc----attgga-----ttgtgctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                                                                                           || | | || |      |  | |||  | |     | || |||    |||| |  | | |   || |||||| || ||||| |||||||| ||||||||||| ||||||||||| || |||||    || ||   ||| || || || ||  |||| || |||||  | |
-------------------------------------------------------------------------------------------gtacaagaactcgatcattttgatttggatccagtttctaagc----attgga-ttgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 5
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                                                                                           || | | || |      |  | |||  | |     | || |||    |||| |     |  |||| |||||| || ||||| |||||||| ||||||||||| ||||||||||| || |||||    || ||   ||| || || || ||  |||| || |||||  | |
-------------------------------------------------------------------------------------------gtgcaagaactcgatcgttttgatttggatccagtttctaagc----attgga-----ttgttctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37833126|gb|BJ591138.1|BJ591138
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162259901|gb|FC436036.1|FC436036
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|7648130|gb|AW739113.1|AW739113
EST:     CAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67709528|gb|BJ965344.1|BJ965344
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGG
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGG
EST: gi|67717578|gb|BJ967837.1|BJ967837
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGG
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGG
EST: gi|162276013|gb|FC452289.1|FC452289
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162238647|gb|FC418191.1|FC418191
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162227653|gb|FC402334.1|FC402334
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTTTGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|37848305|gb|BJ606313.1|BJ606313
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67726093|gb|BJ976352.1|BJ976352
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162259362|gb|FC436227.1|FC436227
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|37821206|gb|BJ579272.1|BJ579272
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|37839877|gb|BJ597885.1|BJ597885
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|22132378|gb|BQ827121.1|BQ827121
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGTTTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162254376|gb|FC430511.1|FC430511
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|18335223|gb|BJ167241.1|BJ167241
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162226892|gb|FC403080.1|FC403080
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|37831992|gb|BJ590004.1|BJ590004
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|37838960|gb|BJ596968.1|BJ596968
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|37845113|gb|BJ603121.1|BJ603121
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATNCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162259569|gb|FC435496.1|FC435496
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|208363095|gb|DC958008.1|DC958008
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|18335112|gb|BJ167130.1|BJ167130
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67726844|gb|BJ977103.1|BJ977103
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|18338462|gb|BJ170486.1|BJ170486
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|18332762|gb|BJ164775.1|BJ164775
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|7647938|gb|AW738921.1|AW738921
EST:     GTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: GTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|208362665|gb|DC939533.1|DC939533
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162251398|gb|FC427689.1|FC427689
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162231531|gb|FC407981.1|FC407981
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162231532|gb|FC407982.1|FC407982
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67723601|gb|BJ973860.1|BJ973860
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162254375|gb|FC430510.1|FC430510
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|37821439|gb|BJ579505.1|BJ579505
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|15728027|gb|BI740583.1|BI740583
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|22492461|gb|BU052384.1|BU052384
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67723068|gb|BJ973327.1|BJ973327
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162222971|gb|FC399927.1|FC399927
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|7047187|gb|AW477081.1|AW477081
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67720681|gb|BJ970940.1|BJ970940
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162259363|gb|FC436228.1|FC436228
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162217178|gb|FC392542.1|FC392542
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162247018|gb|FC422192.1|FC422192
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162202472|gb|FC378713.1|FC378713
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|15261455|gb|BI436765.1|BI436765
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162259902|gb|FC436037.1|FC436037
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67718049|gb|BJ968308.1|BJ968308
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|37831026|gb|BJ589038.1|BJ589038
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67726548|gb|BJ976807.1|BJ976807
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162274783|gb|FC450524.1|FC450524
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|18341762|gb|BJ173797.1|BJ173797
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162228868|gb|FC405012.1|FC405012
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|7287029|gb|AW599516.1|AW599516
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162222970|gb|FC399926.1|FC399926
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162238646|gb|FC418190.1|FC418190
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162226891|gb|FC403079.1|FC403079
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162264071|gb|FC439925.1|FC439925
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|100361910|gb|BY947688.1|BY947688
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GNAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162274782|gb|FC450523.1|FC450523
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67724505|gb|BJ974764.1|BJ974764
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|37829948|gb|BJ587960.1|BJ587960
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|37833361|gb|BJ591373.1|BJ591373
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162227667|gb|FC402335.1|FC402335
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162272710|gb|FC448336.1|FC448336
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162206864|gb|FC382726.1|FC382726
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162268227|gb|FC443905.1|FC443905
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|7286876|gb|AW599363.1|AW599363
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162264070|gb|FC439924.1|FC439924
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162259568|gb|FC435495.1|FC435495
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|37820999|gb|BJ579065.1|BJ579065
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162228867|gb|FC405011.1|FC405011
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|18340063|gb|BJ172091.1|BJ172091
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67718357|gb|BJ968616.1|BJ968616
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGG
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGG
EST: gi|15727507|gb|BI740326.1|BI740326
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67719120|gb|BJ969379.1|BJ969379
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162247019|gb|FC422193.1|FC422193
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67704567|gb|BJ964800.1|BJ964800
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|67727433|gb|BJ977692.1|BJ977692
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|37822861|gb|BJ580927.1|BJ580927
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162268228|gb|FC443906.1|FC443906
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|162206865|gb|FC382727.1|FC382727
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGATTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
EST: gi|18334395|gb|BJ166412.1|BJ166412
EST:     CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAG                         GGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 134

GGCCAAGTCTATGAAATTCAAGGATGGCTACATGATCTCATCCGGAAGCCCCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacag ... cttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC
                                       ctattccttcttgc  CT-rich tract
                               aattgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG