1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattgacttgcaaccatcgcattcctcgcaaaggagtttgttgaaatgtttggttgcaaagtcatgcgtgttaatgatatagggtcacttctttggattcttgtgtcaaattcttacattttgggtttctgattgtgtgaatgcggtgttgcagCTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAACGTAGGGTTTCTCCGGAGCACTAGTGGAAGGTGCATCAATTTAGTGTTTG
species | Physcomitrella patens |
transcript | PP1S29_123V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCGTTCAGACGGCCTTGTACGTCGATTTCTTTTATTACTACTTTAAGAG CTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAACEST: gi|208388672|gb|DC953448.1|DC953448
genomic: ATCGTTCAGACGGCCTTGTACGTCGATTTCTTTTATTACTACTTTAAGAGgtattgactt ... ggtgttgcagCTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAAC
EST: ATCGTTCAGACGGCCTTGTACGTCGATTTCTTTTATTACTACTTTAAGAG CTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAACEST: gi|208369198|gb|DC944557.1|DC944557
genomic: ATCGTTCAGACGGCCTTGTACGTCGATTTCTTTTATTACTACTTTAAGAGgtattgactt ... ggtgttgcagCTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAAC
EST: ATCGTTCAGACGGCCTTGTACGTCGATTTCTTTTATTACTACTTTAAGAG CTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAACEST: gi|67574732|gb|BJ947556.1|BJ947556
genomic: ATCGTTCAGACGGCCTTGTACGTCGATTTCTTTTATTACTACTTTAAGAGgtattgactt ... ggtgttgcagCTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAAC
EST: ATCGTTCAGACGGCCTTGTACGTCGATTTCTTTTATTACTACTTTAAGAG CTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAACEST: gi|162207957|gb|FC383663.1|FC383663
genomic: ATCGTTCAGACGGCCTTGTACGTCGATTTCTTTTATTACTACTTTAAGAGgtattgactt ... ggtgttgcagCTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAAC
EST: ATCGTTCAGACGGCCTTGTACGTCGATTTCTTTTATTACTACTTTAAGAG CTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAAC
genomic: ATCGTTCAGACGGCCTTGTACGTCGATTTCTTTTATTACTACTTTAAGAGgtattgactt ... ggtgttgcagCTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAAC
cttgtgtcaaattcttacattttgggtttctgattgtgtgaatgcggtgttgcagCTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAACGTAGGGTTTCTCCGGAGCACTAGTGGAAGGTGCATCAATTTAGTGTTTG
aaattcttacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgacttgcaaccatcgcattcctcgcaaaggagtttgttgaaatgtttggttgcaaagtcatgcgtgttaatgatatagggtcacttctttggattcttgtgtcaaattcttacattttgggtttctgattgtgtgaatgcggtgttgcagCTGGAAGAACAACGAGAAGCTGAAGCTACCAGCTTAGATTTACGCCGAAACGTAGGGTTTCTCCGGAGCACTAGTGGAAGGTGCATCAATTTAGTGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG