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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgatgtctaccgccttcttgtaaagtaatcccaaggctataacatcggcatacttttcagtcgtttcgttcatgcgattgactgtgacaatgagctattgctccctcgtcttaattctaaaagttctttctctaacagGTAGCCAAGTGTGTTGAGTTTGGCATACCTGCTCTTCTACTCTTTCTTATCTTCTCCCAG

Basic information

species Physcomitrella patens
transcript PP1S297_61V6.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162155593|gb|FC331024.1|FC331024
EST:     CAGTAACGATATTGGTGGGATTAGGACTTTTTGAGCATGGATTCCCGGGG                         GTAGCCAAGTGTGTTGAGTTTGGCATACCTGCTCTTCTACTCTTTCTTATC
genomic: CAGTAACGATATTGGTGGGATTAGGACTTTTTGAGCATGGATTCCCGGGGgtgagtgatg ... tctctaacagGTAGCCAAGTGTGTTGAGTTTGGCATACCTGCTCTTCTACTCTTTCTTATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgacaatgagctattgctccctcgtcttaattctaaaagttctttctctaacagGTAGCCAAGTGTGTTGAGTTTGGCATACCTGCTCTTCTACTCTTTCTTATCTTCTCCCAG
                               ttctaaa  putative branch site (score: 2)
                                        ttctttctct  putative PPT
                           ttaattctaaaagtt  TA-rich tract