1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacatctatcttccggggagcttgaaaatcacctaaaatatctgctggaatttattgaatcgttttggaagacaattgtggattcgaacgtctgcgtgtgcgttactgaattcgtcgcagtaacggttgtctgcgaatgctttttgagtccggttgctttgccgtggcgtgtacagGTTCCAATCAACCAGTGTCCGTTTGCGAAAGTGCAAAACTATTCTCGTGACGGGCAGATGACAGTGACCGACAACGGTGGAAGCAAGCCCAACTACTACC
species | Physcomitrella patens |
transcript | PP1S292_18V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGCATACGATGACGCCGCCCGGTATCGCATAGGAGGGAATTATTTGCAG GTTCCAATCAACCAGTGTCCGTTTGCGAAAGTGCAAAACTATTCTCGTGACEST: gi|162267114|gb|FC443345.1|FC443345
genomic: TCGCATACGATGACGCCGCCCGGTATCGCATAGGAGGGAATTATTTGCAGgtacatctat ... gcgtgtacagGTTCCAATCAACCAGTGTCCGTTTGCGAAAGTGCAAAACTATTCTCGTGAC
EST: TCGCATACGATGACGCCGCCCGGTATCGCATAGGAGGGAATTATTTGCAG GTTCCAATCAACCAGTGTCCGTTTGCGAAAGTGCAAAACTATTCTCGTGACEST: gi|162267113|gb|FC443344.1|FC443344
genomic: TCGCATACGATGACGCCGCCCGGTATCGCATAGGAGGGAATTATTTGCAGgtacatctat ... gcgtgtacagGTTCCAATCAACCAGTGTCCGTTTGCGAAAGTGCAAAACTATTCTCGTGAC
EST: GTATCGCATAGGAGGGAATTATTTGCAG GTTCCAATCAACCAGTGTCCGTTTGCGAAAGTGCAAAACTATTCTCGTGAC
genomic: GTATCGCATAGGAGGGAATTATTTGCAGgtacatctat ... gcgtgtacagGTTCCAATCAACCAGTGTCCGTTTGCGAAAGTGCAAAACTATTCTCGTGAC
aacggttgtctgcgaatgctttttgagtccggttgctttgccgtggcgtgtacagGTTCCAATCAACCAGTGTCCGTTTGCGAAAGTGCAAAACTATTCTCGTGACGGGCAGATGACAGTGACCGACAACGGTGGAAGCAAGCCCAACTACTACC
cagtaac putative branch site (score: 7)
tttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatctatcttccggggagcttgaaaatcacctaaaatatctgctggaatttattgaatcgttttggaagacaattgtggattcgaacgtctgcgtgtgcgttactgaattcgtcgcagtaacggttgtctgcgaatgctttttgagtccggttgctttgccgtggcgtgtacagGTTCCAATCAACCAGTGTCCGTTTGCGAAAGTGCAAAACTATTCTCGTGACGGGCAGATGACAGTGACCGACAACGGTGGAAGCAAGCCCAACTACTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG