1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaatatggatcttcaactctctgaactggcgtacactcatttgcaagacttcgatgtgtacatagaggtgataactcttccaacgaattcatgtgaacagAGCCTTTTCCGGAAAATCGCTGGAGCGTTACCTGGAATGGAGTCTGTGAATCCGTCAAAGCAGGATGATTACGTGGATATCAACTTGAAAACAACGTCGA
species | Physcomitrella patens |
transcript | PP1S288_43V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTAGCGCACTCATGATTGAGACCAGTGCTAAAGCGGGATTTAATATCAAG AGCCTTTTCCGGAAAATCGCTGGAGCGTTACCTGGAATGGAGTCTGTGAATEST: gi|37848187|gb|BJ606195.1|BJ606195
genomic: TTAGCGCACTCATGATTGAGACCAGTGCTAAAGCGGGATTTAATATCAAGgccagtgcat ... atgtgaacagAGCCTTTTCCGGAAAATCGCTGGAGCGTTACCTGGAATGGAGTCTGTGAAT
EST: TTAGCGCACTCATGATTGAGACCAGTGCTAAAGCGGGATTTAATATCAAG AGCCTTTTCCGGAAAATCGCTGGAGCGTTACCTGGAATGGAGTCTGTGAATEST: gi|37850119|gb|BJ608127.1|BJ608127
genomic: TTAGCGCACTCATGATTGAGACCAGTGCTAAAGCGGGATTTAATATCAAGgccagtgcat ... atgtgaacagAGCCTTTTCCGGAAAATCGCTGGAGCGTTACCTGGAATGGAGTCTGTGAAT
EST: TTAGCGCACTCATGATTGAGACCAGTGCTAAAGCGGGATTTAATATCAAG AGCCTTTTCCGGAAAATCGCTGGAGCGTTACCTGGAATGGAGTCTGTGAAT
genomic: TTAGCGCACTCATGATTGAGACCAGTGCTAAAGCGGGATTTAATATCAAGgccagtgcat ... atgtgaacagAGCCTTTTCCGGAAAATCGCTGGAGCGTTACCTGGAATGGAGTCTGTGAAT
agacttcgatgtgtacatagaggtgataactcttccaacgaattcatgtgaacagAGCCTTTTCCGGAAAATCGCTGGAGCGTTACCTGGAATGGAGTCTGTGAATCCGTCAAAGCAGGATGATTACGTGGATATCAACTTGAAAACAACGTCGA
tgataac putative branch site (score: 8)
aattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatatggatcttcaactctctgaactggcgtacactcatttgcaagacttcgatgtgtacatagaggtgataactcttccaacgaattcatgtgaacagAGCCTTTTCCGGAAAATCGCTGGAGCGTTACCTGGAATGGAGTCTGTGAATCCGTCAAAGCAGGATGATTACGTGGATATCAACTTGAAAACAACGTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG