1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtgtggttgtcaatacaactcctctagtgtgaacatcatcaatggaattgtgtgaggagaagatgaaggtgctattcgtgtattcaaaccagcatcaacagagtagagctgtattattattattattttttgtttgctttgttctcattattattattattattattattttcctgcagGTCTCGAAGTGGATGCTAAGCAAAGGGCAAGGGAAGACTATGGGCACATTCACGCTTCTGCTGGAGGCTTTGGATCACGAGGGGCGTGTAGAGGAAGCTG
species | Physcomitrella patens |
transcript | PP1S286_16V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGCGATGGCATTCATGGCCGAAGAACAAAAATGGAGACAGATAATACAG GTCTCGAAGTGGATGCTAAGCAAAGGGCAAGGGAAGACTATGGGCACATTCEST: gi|67695239|gb|BJ955472.1|BJ955472
genomic: AAGCGATGGCATTCATGGCCGAAGAACAAAAATGGAGACAGATAATACAGgtgtgtggtt ... tttcctgcagGTCTCGAAGTGGATGCTAAGCAAAGGGCAAGGGAAGACTATGGGCACATTC
EST: AAGCGATGGCATTCATGGCCGAAGAACAAAAATGGAGACAGATAATACAG GTCTCGAAGTGGATGCTAAGCAAAGGGCAAGGGAAGACTATGGGCACATTCEST: gi|162240033|gb|FC418810.1|FC418810
genomic: AAGCGATGGCATTCATGGCCGAAGAACAAAAATGGAGACAGATAATACAGgtgtgtggtt ... tttcctgcagGTCTCGAAGTGGATGCTAAGCAAAGGGCAAGGGAAGACTATGGGCACATTC
EST: AAGCGATGGCATTCATGGCCGAAGAACAAAAATGGAGACAGATAATACAG GTCTCGAAGTGGATGCTAAGCAAAGGGCAAGGGAAGACTATGGGCACATTCEST: gi|162240034|gb|FC418811.1|FC418811
genomic: AAGCGATGGCATTCATGGCCGAAGAACAAAAATGGAGACAGATAATACAGgtgtgtggtt ... tttcctgcagGTCTCGAAGTGGATGCTAAGCAAAGGGCAAGGGAAGACTATGGGCACATTC
EST: AAGCGATGGCATTCATGGCCGAAGAACAAAAATGGAGACAGATAATACAG GTCTCGAAGTGGATGCTAAGCAAAGGGCAAGGGAAGACTATGGGCACATTC
genomic: AAGCGATGGCATTCATGGCCGAAGAACAAAAATGGAGACAGATAATACAGgtgtgtggtt ... tttcctgcagGTCTCGAAGTGGATGCTAAGCAAAGGGCAAGGGAAGACTATGGGCACATTC
attttttgtttgctttgttctcattattattattattattattattttcctgcagGTCTCGAAGTGGATGCTAAGCAAAGGGCAAGGGAAGACTATGGGCACATTCACGCTTCTGCTGGAGGCTTTGGATCACGAGGGGCGTGTAGAGGAAGCTG
ttattttcct CT-rich tract
tttgctttgttctcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtggttgtcaatacaactcctctagtgtgaacatcatcaatggaattgtgtgaggagaagatgaaggtgctattcgtgtattcaaaccagcatcaacagagtagagctgtattattattattattttttgtttgctttgttctcattattattattattattattattttcctgcagGTCTCGAAGTGGATGCTAAGCAAAGGGCAAGGGAAGACTATGGGCACATTCACGCTTCTGCTGGAGGCTTTGGATCACGAGGGGCGTGTAGAGGAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG