Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttttgtacctatcacggtgaatgaagccacgaaacatatatccggctgtgaaatgttgacaccgaaatttgtaatgttttgtcatcgatatgtttattgaactgggtctgtatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGAGACAGGAAAGGTGGTAGAGTTTATTAAGTTCGACATTGGTAACATCGTC

Basic information

species Physcomitrella patens
transcript PP1S282_25V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162206404|gb|FC383397.1|FC383397
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|37853532|gb|BJ611540.1|BJ611540
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|67710125|gb|BJ965862.1|BJ965862
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162179274|gb|FC356223.1|FC356223
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|18367098|gb|BJ199178.1|BJ199178
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|18360158|gb|BJ192220.1|BJ192220
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|208381818|gb|DC923384.1|DC923384
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162259821|gb|FC435956.1|FC435956
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162190842|gb|FC368040.1|FC368040
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|19784064|gb|BQ040113.1|BQ040113
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAA                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162259820|gb|FC435955.1|FC435955
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|7148076|gb|AW509998.1|AW509998
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162170017|gb|FC345070.1|FC345070
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162258718|gb|FC434517.1|FC434517
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162190843|gb|FC368041.1|FC368041
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|18368232|gb|BJ200317.1|BJ200317
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|18336053|gb|BJ168075.1|BJ168075
EST:     GTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|208372562|gb|DC940809.1|DC940809
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162279161|gb|FC455500.1|FC455500
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|208354395|gb|DC953815.1|DC953815
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162258719|gb|FC434518.1|FC434518
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|19788794|gb|BQ040929.1|BQ040929
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162280390|gb|FC456095.1|FC456095
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|37846839|gb|BJ604847.1|BJ604847
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|13315379|gb|BG409034.1|BG409034
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162263565|gb|FC438853.1|FC438853
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162280391|gb|FC456096.1|FC456096
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACG
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACG
EST: gi|18325295|gb|BJ157291.1|BJ157291
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATC
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATC
EST: gi|162179273|gb|FC356222.1|FC356222
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162170018|gb|FC345071.1|FC345071
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162206405|gb|FC383398.1|FC383398
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|67724126|gb|BJ974385.1|BJ974385
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162263566|gb|FC438854.1|FC438854
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|18333542|gb|BJ165557.1|BJ165557
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|18366461|gb|BJ198540.1|BJ198540
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|67572957|gb|BJ945781.1|BJ945781
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162200037|gb|FC376499.1|FC376499
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|67718208|gb|BJ968467.1|BJ968467
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|37851370|gb|BJ609378.1|BJ609378
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|18333247|gb|BJ165261.1|BJ165261
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|37847531|gb|BJ605539.1|BJ605539
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|67696339|gb|BJ956572.1|BJ956572
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|18338941|gb|BJ170967.1|BJ170967
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|162279160|gb|FC455499.1|FC455499
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
EST: gi|208346219|gb|DC909525.1|DC909525
EST:     GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAG                         GTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA
genomic: GGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 21

TACAAGTTGTGCAAGGTGAGGTCCGCCCAATTCGGTGACAAGGGCGTTCCCTACATCACCACTTTTGACGGTCGCACTATCAGgtatcttttg ... tatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGAGACAGGAAAGGTGGTAGAGTTTATTAAGTTCGACATTGGTAACATCGTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgtaatgttttgtcatcgatatgtttattgaactgggtctgtatgttacagGTACCCAGACCCACTTATCAAGGCCAACGATACAGTCAAGATCAACCTTGAGACAGGAAAGGTGGTAGAGTTTATTAAGTTCGACATTGGTAACATCGTC
                      atatgtttattgaa  TA-rich tract