1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtatcttcacctccctaggcttctcttaggttttaagcgactagtgactcgtcttttttcgtgttcagaagggcggggctctcagaaaatcttattcattcgtctagttatctggtattttgaagtttgtaaatctgagactaagcgcaatatgaatggtttgatttttacccgcgtaaaacttgttgttgtgcagCATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGGTACTAGTGGATCACTCGATGGACAACAGCGTCTTGTTGTGAAAGGGCGA
species | Physcomitrella patens |
transcript | PP1S280_23V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAACCAAGAAGACTGTTTTTGCCAATTTCATGGATCTTTGCAAGAC CATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGGEST: gi|37837355|gb|BJ595363.1|BJ595363
genomic: GAAGGAACCAAGAAGACTGTTTTTGCCAATTTCATGGATCTTTGCAAGACgtatgtatct ... tgttgtgcagCATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGG
EST: GAAGGAACCAAGAAGACTGTTTTTGCCAATTTCATGGATCTTTGCAAGAC CATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGGEST: gi|37824018|gb|BJ582084.1|BJ582084
genomic: GAAGGAACCAAGAAGACTGTTTTTGCCAATTTCATGGATCTTTGCAAGACgtatgtatct ... tgttgtgcagCATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGG
EST: GAAGGAACCAAGAAGACTGTTTTTGCCAATTTCATGGATCTTTGCAAGAC CATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGGEST: gi|162238808|gb|FC417637.1|FC417637
genomic: GAAGGAACCAAGAAGACTGTTTTTGCCAATTTCATGGATCTTTGCAAGACgtatgtatct ... tgttgtgcagCATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGG
EST: GAAGGAACCAAGAAGACTGTTTTTGCCAATTTCATGGATCTTTGCAAGAC CATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGGEST: gi|162177655|gb|FC353241.1|FC353241
genomic: GAAGGAACCAAGAAGACTGTTTTTGCCAATTTCATGGATCTTTGCAAGACgtatgtatct ... tgttgtgcagCATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGG
EST: GAAGGAACCAAGAAGACTGTTTTTGCCAATTTCATGGATCTTTGCAAGAC CATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGG
genomic: GAAGGAACCAAGAAGACTGTTTTTGCCAATTTCATGGATCTTTGCAAGACgtatgtatct ... tgttgtgcagCATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGG
taagcgcaatatgaatggtttgatttttacccgcgtaaaacttgttgttgtgcagCATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGGTACTAGTGGATCACTCGATGGACAACAGCGTCTTGTTGTGAAAGGGCGA
gtttgat putative branch site (score: 48)
tttgattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatcttcacctccctaggcttctcttaggttttaagcgactagtgactcgtcttttttcgtgttcagaagggcggggctctcagaaaatcttattcattcgtctagttatctggtattttgaagtttgtaaatctgagactaagcgcaatatgaatggtttgatttttacccgcgtaaaacttgttgttgtgcagCATGCATCGGCAACCAGAGCACGTTATGGCTTTCTTGTTAGCCGAGTTGGGTACTAGTGGATCACTCGATGGACAACAGCGTCTTGTTGTGAAAGGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA