1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...catatacaattgtgctttcgcctaaaaaaaactttacacatccttgaaatggccaggggcaagcgttgaggttaagctctaacctctgtttggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAG
species | Physcomitrella patens |
transcript | PP1S279_72V6.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAG GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGEST: gi|208391821|gb|DC937997.1|DC937997
genomic: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAGgtgagaccgt ... tggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
EST: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAG GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGEST: gi|100406182|gb|BY991580.1|BY991580
genomic: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAGgtgagaccgt ... tggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
EST: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAG GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGEST: gi|100364783|gb|BY947906.1|BY947906
genomic: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAGgtgagaccgt ... tggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
EST: TATTATACCCTCTCCTTTTCNNACTAAACGTATGCTAGTAATGAAAACAG -CAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATEST: gi|19789205|gb|BQ041166.1|BQ041166
genomic: TATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAA-CAGgtgagaccgt ... tggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTAT
EST: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAG GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGEST: gi|162257981|gb|FC433867.1|FC433867
genomic: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAGgtgagaccgt ... tggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
EST: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAG GCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
genomic: ATATTATACCCTCTCCTTTTCCAACTAAACGTATGCTAGTAATGAAACAGgtgagaccgt ... tggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATG
gaaatggccaggggcaagcgttgaggttaagctctaacctctgtttggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAG
ctctaac putative branch site (score: 2)
cctctgttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatacaattgtgctttcgcctaaaaaaaactttacacatccttgaaatggccaggggcaagcgttgaggttaagctctaacctctgtttggttggcagGCAGTTGGGGTTGTAGGTGCTATCACACCATGGAATTTTCCGCTTGCTATGATTACTCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - cacatcc