1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agcttgcggcattctccactaacttgtgaagcgcactactatgttaatgattgctgagatttatctttgactgagttcacttgatggtgggaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATTCTGGAGGAAACCATCCGTGGCGGATTCCCACTCTTGATCATTGCCGAGG
species | Physcomitrella patens |
transcript | PP1S276_75V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGG CTCCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATTEST: gi|162187015|gb|FC363421.1|FC363421
genomic: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGGgtatgtttgt ... gaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATT
EST: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGG CTCCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATTEST: gi|162270366|gb|FC447066.1|FC447066
genomic: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGGgtatgtttgt ... gaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATT
EST: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGG CTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATTEST: gi|162191911|gb|FC366916.1|FC366916
genomic: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGGgtatgtttgt ... gaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATT
EST: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGG CTCCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATTEST: gi|162185158|gb|FC362292.1|FC362292
genomic: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGGgtatgtttgt ... gaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATT
EST: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGG CTCCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATTEST: gi|162186625|gb|FC363597.1|FC363597
genomic: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGGgtatgtttgt ... gaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATT
EST: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGG CTCCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATTEST: gi|162176794|gb|FC352808.1|FC352808
genomic: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGGgtatgtttgt ... gaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATT
EST: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGG CTCCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATTEST: gi|162191287|gb|FC366861.1|FC366861
genomic: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGGgtatgtttgt ... gaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATT
EST: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGG CTCCTCTTGGTCGATAAGAAGGTCACAACTGCCCGTGACATGATCGGAATTEST: gi|162150108|gb|FC326821.1|FC326821
genomic: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGGgtatgtttgt ... gaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATT
EST: CTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGG CTCCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATTEST: gi|162157274|gb|FC332908.1|FC332908
genomic: CTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGGgtatgtttgt ... gaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATT
EST: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGG CTCCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATT
genomic: ACTTTGTGACTGATCCCGAGAAGATGGATGTTGAGTACGACAACTGCAGGgtatgtttgt ... gaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATT
aatgattgctgagatttatctttgactgagttcacttgatggtgggaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATTCTGGAGGAAACCATCCGTGGCGGATTCCCACTCTTGATCATTGCCGAGG
atttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttgcggcattctccactaacttgtgaagcgcactactatgttaatgattgctgagatttatctttgactgagttcacttgatggtgggaccctgcagCTTCTCTTGGTCGATAAGAAGATCACAACTGCCCGTGACATGATCGGAATTCTGGAGGAAACCATCCGTGGCGGATTCCCACTCTTGATCATTGCCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - tgcggca