1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taaccttctagaaactacatatcccatcttacatagcctgtaatgtgggtttttgtcggtcctttggatttaaatacatgttagcttggtatatctgcagGTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACA
species | Physcomitrella patens |
transcript | PP1S276_27V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGAATATCTTCGACTTACGAGCCTGGGAGTCATTGGTGCCCTTGTCAAG GTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCTEST: gi|208385972|gb|DC956810.1|DC956810
genomic: TTGAATATCTTCGACTTACGAGCCTGGGAGTCATTGGTGCCCTTGTCAAGgtgcttttgt ... atatctgcagGTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCT
EST: GGAGTCATTGGTGCCCCTGTCAAG GTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCTEST: gi|208372489|gb|DC948729.1|DC948729
genomic: GGAGTCATTGGTGCCCTTGTCAAGgtgcttttgt ... atatctgcagGTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCT
EST: TTGAATAT-TTCGACTTACGAGCCTGGGAGTCATTGGTGCCCTTGTCAAG GTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCTEST: gi|162181709|gb|FC358739.1|FC358739
genomic: TTGAATATCTTCGACTTACGAGCCTGGGAGTCATTGGTGCCCTTGTCAAGgtgcttttgt ... atatctgcagGTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCT
EST: TTGAATATCTTCGACTTACGAGCCTGGGAGTCATTGGTGCCCTTGTCAAG GTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCTEST: gi|208364640|gb|DC935425.1|DC935425
genomic: TTGAATATCTTCGACTTACGAGCCTGGGAGTCATTGGTGCCCTTGTCAAGgtgcttttgt ... atatctgcagGTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCT
EST: TTGAATATCTTCGACTTACGAGCCTGGGAGTCATTGGTGCCCTTGTCAAG GTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCTEST: gi|100389661|gb|BY952467.1|BY952467
genomic: TTGAATATCTTCGACTTACGAGCCTGGGAGTCATTGGTGCCCTTGTCAAGgtgcttttgt ... atatctgcagGTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCT
EST: TGAATATCTTCGACTTACGAGCCTGGGAGTCATTGGTGCCCTTGTNCA-G GTGGATGACACTGAAGTTATTAATTTCCTACTGTNCA-CCGAGATTATTCEST: gi|208359584|gb|DC934599.1|DC934599
genomic: TGAATATCTTCGACTTACGAGCCTGGGAGTCATTGGTGCCCTTGT-CAAGgtgcttttgt ... atatctgcagGTGGATGACACTGAAGTTATTAATTTCCTACTGT-CAACCGAGATTATTC
EST: TTGAATATCTTCGACTTACGAGCCTGGGAGTCATTGGTGCCCTTGTCAAG GTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCT
genomic: TTGAATATCTTCGACTTACGAGCCTGGGAGTCATTGGTGCCCTTGTCAAGgtgcttttgt ... atatctgcagGTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCT
tgggtttttgtcggtcctttggatttaaatacatgttagcttggtatatctgcagGTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACA
atttaaatacatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaccttctagaaactacatatcccatcttacatagcctgtaatgtgggtttttgtcggtcctttggatttaaatacatgttagcttggtatatctgcagGTGGATGACACTGAAGTTATTAATTTCCTACTGTCAACCGAGATTATTCCTCTGTGCCTACGAACGATGGAGATGGGAAGTGAACTATCCAAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG