1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acggtactgatcaatcagttttgtaatcagtattttctttatttaatcctctggaattctgggatgacggatgccttgacatagttagatgttgatgcagATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTAGTGGATGACAAATATACAGGTGAAATCCATGTAACGATTATTGCCACGG
species | Physcomitrella patens |
transcript | PP1S275_2V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCACTGGTGGACCGGACCTCACATTGCAGGAAGTCAACACCGTGTCTGAG ATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTAEST: gi|67693878|gb|BJ954111.1|BJ954111
genomic: TCACTGGTGGACCGGACCTCACATTGCAGGAAGTCAACACCGTGTCTGAGgtttgcgctc ... gttgatgcagATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTA
EST: TCACTGGTGGACCGGACCTCACATTGCAGGAAGTCAACACCGTGTCTGAG ATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTAEST: gi|67721018|gb|BJ971277.1|BJ971277
genomic: TCACTGGTGGACCGGACCTCACATTGCAGGAAGTCAACACCGTGTCTGAGgtttgcgctc ... gttgatgcagATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTA
EST: TCACTGGTGGACCGGACCTCACATTGCAGGAAGTCAACACCGTGTCTGAG ATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTAEST: gi|162196653|gb|FC374943.1|FC374943
genomic: TCACTGGTGGACCGGACCTCACATTGCAGGAAGTCAACACCGTGTCTGAGgtttgcgctc ... gttgatgcagATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTA
EST: TCACTGGTGGACCGGACCTCACATTGCAGGAAGTCAACACCGTGTCTGAG ATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTAEST: gi|162196652|gb|FC374942.1|FC374942
genomic: TCACTGGTGGACCGGACCTCACATTGCAGGAAGTCAACACCGTGTCTGAGgtttgcgctc ... gttgatgcagATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTA
EST: TCACTGGTGGACCGGACCTCACATTGCAGGAAGTCAACACCGTGTCTGAG ATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTAEST: gi|37840343|gb|BJ598351.1|BJ598351
genomic: TCACTGGTGGACCGGACCTCACATTGCAGGAAGTCAACACCGTGTCTGAGgtttgcgctc ... gttgatgcagATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTA
EST: TCACTGGTGGACCGGACCTCACATTGCAGGAAGTCAACACCGTGTCTGAG ATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTA
genomic: TCACTGGTGGACCGGACCTCACATTGCAGGAAGTCAACACCGTGTCTGAGgtttgcgctc ... gttgatgcagATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTA
atcctctggaattctgggatgacggatgccttgacatagttagatgttgatgcagATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTAGTGGATGACAAATATACAGGTGAAATCCATGTAACGATTATTGCCACGG
tgttgat putative branch site (score: 2)
atagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acggtactgatcaatcagttttgtaatcagtattttctttatttaatcctctggaattctgggatgacggatgccttgacatagttagatgttgatgcagATTGTAACAGGTTTAGCTGACCCCTCAGCTAATATCATTTTTGGAGCGGTAGTGGATGACAAATATACAGGTGAAATCCATGTAACGATTATTGCCACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA