1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtataaactttacagtgaggggataatgctctagcactttgacaggtatttagcagggtttacaagctactcattatgagaatgttggggccgtgtgcagGGAGAAGCCATTGCTTTCAATTTGAGGGAAATGTTTGGCATTAAAGTGCCCATCATCGCAATCGTAATTGGAGAGGGTGGCTCTGGAGGTGCACTTGCCA
species | Physcomitrella patens |
transcript | PP1S275_19V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAAAGCAGAAGAAGTTGGTCAG GGAGAAGCCATTGCTTTCAATTTGAGGGAAATGTTTGGCATTAAAGTGCCCEST: gi|162191351|gb|FC368147.1|FC368147
genomic: TCAAAGCAGAAGAAGTTGGTCAGgtatgccgag ... ccgtgtgcagGGAGAAGCCATTGCTTTCAATTTGAGGGAAATGTTTGGCATTAAAGTGCCC
EST: TTGATACCCCAGGAGCATATGCTGGTATCAAAGCAGAAGAAGTTGGTCAG GGAGAAGCCATTGCTTTCAATTTGAGGGAAATGTTTGGCATTAAAGTGCCC
genomic: TTGATACCCCAGGAGCATATGCTGGTATCAAAGCAGAAGAAGTTGGTCAGgtatgccgag ... ccgtgtgcagGGAGAAGCCATTGCTTTCAATTTGAGGGAAATGTTTGGCATTAAAGTGCCC
gtatttagcagggtttacaagctactcattatgagaatgttggggccgtgtgcagGGAGAAGCCATTGCTTTCAATTTGAGGGAAATGTTTGGCATTAAAGTGCCCATCATCGCAATCGTAATTGGAGAGGGTGGCTCTGGAGGTGCACTTGCCA
tttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaactttacagtgaggggataatgctctagcactttgacaggtatttagcagggtttacaagctactcattatgagaatgttggggccgtgtgcagGGAGAAGCCATTGCTTTCAATTTGAGGGAAATGTTTGGCATTAAAGTGCCCATCATCGCAATCGTAATTGGAGAGGGTGGCTCTGGAGGTGCACTTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG