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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtatattatatggtattttctggaggcgtgtgaagagggttagaattaggctatccattgaagatatctttccttatgataaacttcacttgtttgcagATTGGTAGTCACTATCACTTTATTGAAACCAATCCTTACCTTTGTTTTGATCGAGAGAAAGCCTATGGCATGCGCCTCAATATTTCTGCTGGGTCGGCTG

Basic information

species Physcomitrella patens
transcript PP1S274_69V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S274_69V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA05G27840.1 (Glycine max), 3'ss of exon 5
tgtatattatatggtattttctggaggcgtgtgaagagggttagaattaggctatcca------ttgaagatatctttccttatgataaacttcacttgtttgcagATTGGTAGTCACTATCACTTTATTGAAACCAATCCTTACCTTTGTTTTGATCGAGAGAAAGCCTATGGCATGCGCCTCAATATTTCTGCTGGGTCGGCTG
   |||   | | | | ||     |  |     ||  |  ||    ||||| | ||||      ||||||  | | || | ||  |||    | |    ||  ||| ||||||| |||||||| |||||||||   ||||| ||| |   ||||||||||  |||||| ||||||||||||||||||||  |||| ||  | ||||
--aataaattttaggagttcaaatatccaaacaaattgatttcttgttaggttttccaagtgaattgaagcaaacattgccta--atagttatgaaaaatt--cagGTTGGTAGCCACTATCATTTTATTGAAGTAAATCCCTACTTGACTTTTGATCGAAGGAAAGCATATGGCATGCGCCTCAATATAGCTGCAGGAACTGCTG

upper sequence: PP1S274_69V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA11G37250.2 (Glycine max), 3'ss of exon 6
tgtatattatatggtattttctggaggcg-tgtgaagagggttagaattaggctatccattgaagatatctttccttatgataaacttcacttgtttgcagATTGGTAGTCACTATCACTTTATTGAAACCAATCCTTACCTTTGTTTTGATCGAGAGAAAGCCTATGGCATGCGCCTCAATATTTCTGCTGGGTCGGCTG
 || |   ||||   |  |  | ||   | |||          |  || |    ||   || |  ||| |  || || | |  |  ||      ||| ||| |||| || |||||||| |||||||||   ||||||||  |    |||||||||  |||||| ||||||||||||||||||||  ||||||||   ||  
-gtttcaaatattccagctaatcgactagctgtttcctttcccaacataaaaaaataagttaactatagcaatcatttttaatacttttgaaaattttcagGTTGGCAGCCACTATCATTTTATTGAAGTAAATCCTTATTTAACCTTTGATCGAAGGAAAGCATATGGCATGCGCCTCAATATAGCTGCTGGGAATGCCA

upper sequence: PP1S274_69V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA08G10850.1 (Glycine max), 3'ss of exon 4
tgtatattatatggtattttctggaggcgtgtgaagagggttagaattaggctatcca--ttgaagatatctttccttatgataaacttcacttgtttgcagATTGGTAGTCACTATCACTTTATTGAAACCAATCCTTACCTTTGTTTTGATCGAGAGAAAGCCTATGGCATGCGCCTCAATATTTCTGCTGGGTCGGCTG
   |||   |   | | ||     |  |     ||  || ||    |||| || | ||  || |    | |   | ||     | | ||       ||  ||   || || |||||||| |||||||||   ||||| ||| |   ||||||||||  |||| | |||||||||||||||||||| ||||| ||| | ||||
--aataaagttcaggagttcaaatatccaaacaaattggttttttgttagccttttcaagttaactgaagcaaacattgcctaatatttatggaaattttagGAGGGAAGCCACTATCATTTTATTGAAGTGAATCCCTACTTGACTTTTGATCGAAGGAAATCATATGGCATGCGCCTCAATATATCTGCAGGGACTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaggctatccattgaagatatctttccttatgataaacttcacttgtttgcagATTGGTAGTCACTATCACTTTATTGAAACCAATCCTTACCTTTGTTTTGATCGAGAGAAAGCCTATGGCATGCGCCTCAATATTTCTGCTGGGTCGGCTG
                                       cttcactt  CT-rich tract
                             ttatgataaa  TA-rich tract