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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattgacaaaatttctagagtttgaagaacctcgtggacgcaacttttatttaaatttcgcattgcaagctaattttaaacatttccatacgtattctaatggtttgtgaatcatatcaagtctttttcttaaaatttggcagctgatcaggaatcgatctctgacgagtgtttttggggatgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATGTGCTCTTTTGTGTATGTTAATAGCTGTACACATTTTCGGGATTAGTAAA

Basic information

species Physcomitrella patens
transcript PP1S272_13V6.5
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162205230|gb|FC380912.1|FC380912
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|162239982|gb|FC418785.1|FC418785
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|67697134|gb|BJ957367.1|BJ957367
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|67701145|gb|BJ961378.1|BJ961378
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|67573748|gb|BJ946572.1|BJ946572
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGANGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|67694074|gb|BJ954307.1|BJ954307
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAANCTGAGGGCAATGTTGCCACGTTGGCTATC
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATC
EST: gi|67693986|gb|BJ954219.1|BJ954219
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|67700516|gb|BJ960749.1|BJ960749
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|67692354|gb|BJ952587.1|BJ952587
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCNCGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|162239983|gb|FC418786.1|FC418786
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|67701515|gb|BJ961748.1|BJ961748
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|37842305|gb|BJ600313.1|BJ600313
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|162219374|gb|FC396904.1|FC396904
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|67508506|gb|BJ941371.1|BJ941371
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|208395581|gb|DC928996.1|DC928996
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|67693480|gb|BJ953713.1|BJ953713
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|162222811|gb|FC399065.1|FC399065
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|162162852|gb|FC338101.1|FC338101
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|67700294|gb|BJ960527.1|BJ960527
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|37850310|gb|BJ608318.1|BJ608318
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTACCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|162246985|gb|FC424785.1|FC424785
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|37849018|gb|BJ607026.1|BJ607026
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|208367515|gb|DC955695.1|DC955695
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|162205229|gb|FC380911.1|FC380911
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|37846944|gb|BJ604952.1|BJ604952
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|67691726|gb|BJ951959.1|BJ951959
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|162161409|gb|FC337615.1|FC337615
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|67692348|gb|BJ952581.1|BJ952581
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
EST: gi|162247194|gb|FC420236.1|FC420236
EST:     ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAG                         AAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG
genomic: ATAGAGTTGTTATCATTATGAACGGAAAGTTCTTGCCCCACGTTGAACAGgtaaattgac ... atgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggcagctgatcaggaatcgatctctgacgagtgtttttggggatgtctgcagAAAGCTGAGGGCAATGTTGCCACGTTGGCTATCTCTTCCTCATGAGAGATGTGCTCTTTTGTGTATGTTAATAGCTGTACACATTTTCGGGATTAGTAAA
                        ctctgac  putative branch site (score: 3)
                                  tgttttt  TA-rich tract