1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtaaccttgaaatattcgtctcatgatagcatcacaattctttgttgaatatattcatatgtggccaattagataattgtttcgcctcttcctgctgcagATGGATGCAGTAAAAGTTATCGAAGAGAGACGGCAGCACGAGTTTGGTAGGATCAGAGGACCATCTTACATTCAG
species | Physcomitrella patens |
transcript | PP1S26_47V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAGGTCAGGAGCTG ATGGATGCAGTAAAAGTTATCGAAGAGAGACGGCAGCACGAGTTTGGTAGGEST: gi|100424622|gb|BY976732.1|BY976732
genomic: ACAGGTCAGGAGCTGgtatgcaact ... cctgctgcagATGGATGCAGTAAAAGTTATCGAAGAGAGACGGCAGCACGAGTTTGGTAGG
EST: CTCTTCATTTCATGGGACTTCAAGTGCGCCGCGCCACAGGTCAGGAGCTG ATGGATGCAGTAAAAGTTATCGAAGAGAGACGGCAGCACGAGTEST: gi|208369313|gb|DC955858.1|DC955858
genomic: CTCTTCATTTCATGGGACTTCAAGTGCGCCGCGCCACAGGTCAGGAGCTGgtatgcaact ... cctgctgcagATGGATGCAGTAAAAGTTATCGAAGAGAGACGGCAGCACGAGT
EST: CTCTTCATTTCATGGGACTTCAAGTGCGCCGCGCCACAGGTCAGGAGCTG ATGGATGCAGTAAAAGTTATCGAAGAGAGACGGCAGCACGAGTTTGGTAGG
genomic: CTCTTCATTTCATGGGACTTCAAGTGCGCCGCGCCACAGGTCAGGAGCTGgtatgcaact ... cctgctgcagATGGATGCAGTAAAAGTTATCGAAGAGAGACGGCAGCACGAGTTTGGTAGG
tgaatatattcatatgtggccaattagataattgtttcgcctcttcctgctgcagATGGATGCAGTAAAAGTTATCGAAGAGAGACGGCAGCACGAGTTTGGTAGGATCAGAGGACCATCTTACATTCAG
ttgtttcgcctcttcc CT-rich tract
aattagataattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccttgaaatattcgtctcatgatagcatcacaattctttgttgaatatattcatatgtggccaattagataattgtttcgcctcttcctgctgcagATGGATGCAGTAAAAGTTATCGAAGAGAGACGGCAGCACGAGTTTGGTAGGATCAGAGGACCATCTTACATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - tgttgaa