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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagagatttgccaggtaagctatattacagaagaacatgtttaatgagcatgtctgttgcaagtgagaatagctgaggcaaggggaaagggttgtgcagTCTTCGCACATCGTTGTGCCTGCAATTCAAGCCTCATCATATTGCTGCGGGAGCTATCTTCTTGGCTGCCAAGTTTTTGAAAGTGAATCTGCCCAAAGAT

Basic information

species Physcomitrella patens
transcript PP1S264_33V6.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S264_33V6.3 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os12g30020.1 (Oryza sativa), 3'ss of exon 5
ttagagatttgccag-gtaagctatattacagaagaacatgtttaatgagcatgtctgttgcaagtgagaatagctgaggcaaggggaaagggttgtgcagTCTTCGCACATCGTTGTGCCTGCAATTCAAGCCTCATCATATTGCTGCGGGAGCTATCTTCTTGGCTGCCAAGTTTTTGAAAGTGAATCTGCCCAAAGAT
       | ||| |  |  | |  |||||       | || |      | ||||| | |  || || | ||             |||      |||| ||| || || || ||| | |||||||| |||||||||||||||||||| || || |||||||| |||||||| || ||| | |||||||| || ||    |||
------gtatgctattgatacccttattatctttagagatatcactcaatcatgtatataacacgttaaaa------------agggcgtatattgtacagGCTGCGTACTTCGCTTTGCCTGCAGTTCAAGCCTCATCATATTGCAGCAGGTGCTATCTTTTTGGCTGCTAAATTTCTCAAAGTGAAGCTTCCATCTGAT

upper sequence: PP1S264_33V6.3 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G115670_T01 (Zea mays), 3'ss of exon 4
ttagagatttgccaggtaagctatattacagaagaacatgtttaatgagcatgtctgttgcaagtgagaata-gctgaggcaaggggaaagggttgtgcagTCTTCGCACATCGTTGTGCCTGCAATTCAAGCCTCATCATATTGCTGCGGGAGCTATCTTCTTGGCTGCCAAGTTTTTGAAAGTGAATCTGCCCAAAGAT
               ||| ||||  |   |     || |||    |||   ||    |  ||  || | ||   ||      |       |   ||| ||| || || || ||| | |||||||||||| |||||||||||||||| || || |||||||| |||||||| || ||| | |||||||| || ||    |||
---------------gtatgcta-gtgctacccttac-tgtcgtttgaaattgcagttcacagttgtgtatctactacacttaatattgtgcactgtacagACTGCGTACTTCGCTTTGCCTGCAATTCGAGCCTCATCATATTGCAGCAGGTGCTATCTTTTTGGCTGCTAAATTTCTCAAAGTGAAGCTTCCATCTGAT

upper sequence: PP1S264_33V6.3 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G377311_T01 (Zea mays), 3'ss of exon 5
ttagagatttgccaggtaagctatattacagaagaacatgtttaatgagcatgtctgttgcaagtgagaata-gctgaggcaaggggaaagggttgtgcagTCTTCGCACATCGTTGTGCCTGCAATTCAAGCCTCATCATATTGCTGCGGGAGCTATCTTCTTGGCTGCCAAGTTTTTGAAAGTGAATCTGCCCAAAGAT
               ||| ||||   | |         ||| |  |||   |     |  ||  || | ||   ||      |  |    |   ||| ||| || || || ||| | |||||||| ||  |||||||||||||||| || || |||||||  |||||||| || ||| | ||||||||||| ||    |||
---------------gtatgctag--tgctaccctttctgtcttttgaaattacagttcacagttgtgtatctactacacttaatgttgtgcactgtacagGCTGCGTACTTCGCTTTGCCTGCAGTTTGAGCCTCATCATATTGCAGCTGGTGCTATCTATTTGGCTGCTAAATTTCTCAAAGTGAATCTCCCATCTGAT

upper sequence: PP1S264_33V6.3 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA20G02860.1 (Glycine max), 3'ss of exon 5
ttagagatttgccaggtaagctatattacagaagaacatgtttaatgagcatgtctgttgcaagtgagaatagctgaggcaaggggaaagggttg--tgcagTCTTCGCACATCGTTGTGCCTGCAATTCAAGCCTCATCATATTGCTGCGGGAGCTATCTTCTTGGCTGCCAAGTTTTTGAAAGTGAATCTGCCCAAAGAT
                |  | |  | |      |||  |   |  ||   || | | ||  || | | | | | | |  ||  || |||  || |  | ||| ||  | |||||| | ||||||||||| ||||| ||||||||||| || || || || ||| | ||||||||||| ||||||||||| || ||   ||||
---------gtatgatttggttgcaatttgtttgaatttaactg-tgtcgatttatttttaaaat-atatttgatcacacactggaaaaaagtggctttcagGCTGAGGACATCGCTCTGCCTGCAATTTAAGCCACATCATATTGCGGCAGGTGCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGAT

upper sequence: PP1S264_33V6.3 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA20G02880.1 (Glycine max), 3'ss of exon 4
ttagagatttgccaggtaagctata-ttacagaa-gaacatgtttaatgagcatgtctgttgcaagtgagaatagctgaggcaaggggaaagggttg--tgcagTCTTCGCACATCGTTGTGCCTGCAATTCAAGCCTCATCATATTGCTGCGGGAGCTATCTTCTTGGCTGCCAAGTTTTTGAAAGTGAATCTGCCCAAAGAT
               ||| | | |  || ||    |      |||||    |   |   ||  ||   | | | | | |  ||  || |||  || |  | ||| ||  | |||||| | ||||||||||| ||||| ||||||||||| || || || || ||| | ||||||||||| ||||||||||| || ||   ||||
---------------gtatgatttggttgcaatttgtttgaatttaactgtcgatttatttttaaaatatatttgatcacacactggaaaaaagtggctttcagGCTGAGGACATCGCTCTGCCTGCAATTTAAGCCACATCATATTGCGGCAGGTGCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGAT

upper sequence: PP1S264_33V6.3 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA07G35010.1 (Glycine max), 3'ss of exon 4
ttagagatttgccaggtaagctatattacagaagaacatgtttaatgagcatgtctgttgcaagtgagaatagctgaggcaaggggaaagggttgtgcagTCTTCGCACATCGTTGTGCCTGCAATTCAAGCCTCATCATATTGCTGCGGGAGCTATCTTCTTGGCTGCCAAGTTTTTGAAAGTGAATCTGCCCAAAGAT
       | ||    |   || || ||     |    |  || | |||   | | | ||  || | | | | | | |  ||  || ||  || | | ||| ||  | |||||| | ||||||||||| ||||| ||||||||||| || || || || ||| | ||||||||||| ||||||||||| || ||   ||||
------gtatgatttggttgccat-ttgtttgaatttaacttcattgaatttattttttttaaat-atatttgttcacacactggaaagtggcttt-cagGCTGAGGACATCGCTCTGCCTGCAATTTAAGCCACATCATATTGCGGCAGGTGCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGAT

upper sequence: PP1S264_33V6.3 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA15G41040.1 (Glycine max), 3'ss of exon 4
ttagagatttgccaggtaagctatattacagaagaacatgtttaatgagcatgtctgttgcaagtgagaatagctgaggcaaggggaaagggttgtgcagTCTTCGCACATCGTTGTGCCTGCAATTCAAGCCTCATCATATTGCTGCGGGAGCTATCTTCTTGGCTGCCAAGTTTTTGAAAGTGAATCTGCCCAAAGAT
               ||| |  | |||||| ||     |||| || |    || |  |||  | |     |  ||||    |||   | | | | ||||| ||||| |||||  | ||| ||||||| ||||||||||| ||||| || ||||| || ||| | |||||||||||| |||| ||||| || ||    |||
---------------gtatga-agattacacaaatttttgtt-aaggccagtggcctttg--atttttctttcctgaaatgagg---atgtgatatgcagACTTCGGACATCACTTTGCTTGCAATTTAAGCCTCATCACATTGCAGCTGGAGCCATATTCCTTGCTGCCAAGTTTCTGAAGGTGAAGCTACCATCGGAT

upper sequence: PP1S264_33V6.3 (Physcomitrella patens), 3'ss of exon 5
lower sequence: AT5G45190.1 (Arabidopsis thaliana), 3'ss of exon 5
ttagagatttgccaggtaagctatattacagaagaacatgtttaatgagcatgtctgttgcaagtgagaatagctgaggcaaggggaaagggttgtgcagTCTTCGCACATCGTTGTGCCTGCAATTCAAGCCTCATCATATTGCTGCGGGAGCTATCTTCTTGGCTGCCAAGTTTTTGAAAGTGAATCTGCCCAAAGAT
            |    |||   |||| |     ||    |  ||| |   | | ||       |     |   | |  ||| |  ||  || | |||||||| || |||||  | ||||||||||| ||||||||||||||||| || || || || ||  | || ||||||||  | ||||||||  | ||   ||||
---------gtacgttcaagaactatttccttctaaagcttccaataattctatgtgccttgtattttcgtc-ttcatacaatgaaaagtggct-tgcagTCTACGGACATCTCTCTGCCTGCAATTTAAGCCTCATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAGTTACCATCAGAT