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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtacctcatcatccctcatcttcatgcgtttgcttctcattacatagattttctcagaattctctcctgcgctagttaaaatgtcaaagaagatgcatggcattgcattgcattctccaggcttgatttagttcctgagtatgatttgaggtttccacatgcgcagGTGGAGGTGAGGAAACGAGAAGGCCAAGCACTTAACATCCATATGTTCTGCGCGCGTCGGCCAGGATTACTCCTTTCTACTGTGAGGGCACTTGACGCTT

Basic information

species Physcomitrella patens
transcript PP1S257_22V6.1
intron # 5
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctccaggcttgatttagttcctgagtatgatttgaggtttccacatgcgcagGTGGAGGTGAGGAAACGAGAAGGCCAAGCACTTAACATCCATATGTTCTGCGCGCGTCGGCCAGGATTACTCCTTTCTACTGTGAGGGCACTTGACGCTT
         gcttgat  putative branch site (score: 5)
                                        tttccac  putative PPT
           ttgattta  TA-rich tract