Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcaacactcaacctgaatcgaacattgaagagcgttcatttaaaattatcttcgatttggattgtcgtattggtccagttccattgtctactctcagagtggacttccgctgtagcccctgcacttctgcttaacgatttctgtgttgaagcagACGTTTTGGGAGTCGTCCAGAGTGTGGGGCCTTTAACGACGGTGAATCGTAAATCCAACAACGATGAAATTCCTAAGCGAGACATCGTGCTCTTGGACCA

Basic information

species Physcomitrella patens
transcript PP1S257_1V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100359872|gb|BY947164.1|BY947164
EST:     CACTAAGATTTCTGACCTTGGTCGGCACATAAGTTCCAAGAGGTT-GTCG                         ACGTTTTGGGAGTCGTCCAGAGTGTGGGGCCTTTNAACGACG-TGAATCGT
genomic: CACTAAGATTTCTGACCTTGGTCGGCACATAAGTTCCAAGAGGTTTGTCGgtgcgtgcaa ... gttgaagcagACGTTTTGGGAGTCGTCCAGAGTGTGGGGCCTTT-AACGACGGTGAATCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggacttccgctgtagcccctgcacttctgcttaacgatttctgtgttgaagcagACGTTTTGGGAGTCGTCCAGAGTGTGGGGCCTTTAACGACGGTGAATCGTAAATCCAACAACGATGAAATTCCTAAGCGAGACATCGTGCTCTTGGACCA
                             gcttaac  putative branch site (score: 3)